RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 TXNDC15Q96J42 360 aa17.24■□□□□ 0.35
PCDH1-201ENST00000287008 MRI1Q9BV20 369 aa17.24■□□□□ 0.35
PCDH1-201ENST00000287008 KATNB1Q9BVA0 655 aa17.24■□□□□ 0.35
PCDH1-201ENST00000287008 TREM1Q9NP99 234 aa17.24■□□□□ 0.35
PCDH1-201ENST00000287008 OBP2BQ9NPH6 170 aa17.24■□□□□ 0.35
PCDH1-201ENST00000287008 PLEKHJ1Q9NW61 149 aa17.24■□□□□ 0.35
PCDH1-201ENST00000287008 FAM53CQ9NYF3 392 aa17.24■□□□□ 0.35
PCDH1-201ENST00000287008 GVINP1Q7Z2Y8 2422 aa17.24■□□□□ 0.35
PCDH1-201ENST00000287008 DBHP09172 617 aa17.23■□□□□ 0.35
PCDH1-201ENST00000287008 ZNF44P15621 663 aa17.23■□□□□ 0.35
PCDH1-201ENST00000287008 BMXP51813 675 aa17.23■□□□□ 0.35
PCDH1-201ENST00000287008 PPP2CBP62714 309 aa17.23■□□□□ 0.35
PCDH1-201ENST00000287008 PPP2CAP67775 309 aa17.23■□□□□ 0.35
PCDH1-201ENST00000287008 SIRPAP78324 504 aa17.23■□□□□ 0.35
PCDH1-201ENST00000287008 FAM217AQ8IXS0 508 aa17.23■□□□□ 0.35
PCDH1-201ENST00000287008 ELP4Q96EB1 424 aa17.23■□□□□ 0.35
PCDH1-201ENST00000287008 LYRM4Q9HD34 91 aa17.23■□□□□ 0.35
PCDH1-201ENST00000287008 NOSIPQ9Y314 301 aaKnown RBP17.23■□□□□ 0.35
PCDH1-201ENST00000287008 PRKRAO75569 313 aaKnown RBP17.23■□□□□ 0.35
PCDH1-201ENST00000287008 SNAPC5O75971 98 aa17.23■□□□□ 0.35
PCDH1-201ENST00000287008 TRHRP34981 398 aaPredicted RBP17.23■□□□□ 0.35
PCDH1-201ENST00000287008 CLDN17P56750 224 aa17.23■□□□□ 0.35
PCDH1-201ENST00000287008 RETREG3Q86VR2 466 aa17.23■□□□□ 0.35
PCDH1-201ENST00000287008 SPAG16Q8N0X2 631 aa17.23■□□□□ 0.35
PCDH1-201ENST00000287008 OR13C2Q8NGS9 318 aa17.23■□□□□ 0.35
PCDH1-201ENST00000287008 NEURL3Q96EH8 262 aa17.23■□□□□ 0.35
PCDH1-201ENST00000287008 SLC41A2Q96JW4 573 aa17.23■□□□□ 0.35
PCDH1-201ENST00000287008 RDH8Q9NYR8 311 aa17.23■□□□□ 0.35
PCDH1-201ENST00000287008 TCRBV3S1A0A5B6 114 aa17.23■□□□□ 0.35
PCDH1-201ENST00000287008 H2AFB2P0C5Z0 115 aa17.23■□□□□ 0.35
PCDH1-201ENST00000287008 HTR5AP47898 357 aa17.23■□□□□ 0.35
PCDH1-201ENST00000287008 MEPCEQ7L2J0 689 aaKnown RBP17.23■□□□□ 0.35
PCDH1-201ENST00000287008 ZFP90Q8TF47 636 aa17.23■□□□□ 0.35
PCDH1-201ENST00000287008 SMCO3A2RU48 225 aa17.23■□□□□ 0.35
PCDH1-201ENST00000287008 MPPED1O15442 326 aa17.23■□□□□ 0.35
PCDH1-201ENST00000287008 CREBL2O60519 120 aaPredicted RBP17.23■□□□□ 0.35
PCDH1-201ENST00000287008 TOMM40LQ969M1 308 aa17.23■□□□□ 0.35
PCDH1-201ENST00000287008 IP6K3Q96PC2 410 aa17.23■□□□□ 0.35
PCDH1-201ENST00000287008 TP63Q9H3D4 680 aaPredicted RBP17.23■□□□□ 0.35
PCDH1-201ENST00000287008 PDFQ9HBH1 243 aa17.23■□□□□ 0.35
PCDH1-201ENST00000287008 TMED7-TICAM2A0A0A6YYA0 188 aa17.22■□□□□ 0.35
PCDH1-201ENST00000287008 ACSM3Q53FZ2 586 aa17.22■□□□□ 0.35
PCDH1-201ENST00000287008 MFSD12Q6NUT3 480 aa17.22■□□□□ 0.35
PCDH1-201ENST00000287008 NIPAL3Q6P499 406 aa17.22■□□□□ 0.35
PCDH1-201ENST00000287008 CMTM1Q8IZ96 169 aa17.22■□□□□ 0.35
PCDH1-201ENST00000287008 B3GNT7Q8NFL0 401 aa17.22■□□□□ 0.35
PCDH1-201ENST00000287008 IL17RDQ8NFM7 739 aa17.22■□□□□ 0.35
PCDH1-201ENST00000287008 ZNF845Q96IR2 970 aaPredicted RBP17.22■□□□□ 0.35
PCDH1-201ENST00000287008 MICU1Q9BPX6 476 aa17.22■□□□□ 0.35
PCDH1-201ENST00000287008 TMED7Q9Y3B3 224 aa17.22■□□□□ 0.35
PCDH1-201ENST00000287008 EEF1E1-BLOC1S5C9J1V9 151 aa17.22■□□□□ 0.35
PCDH1-201ENST00000287008 SYT5O00445 386 aa17.22■□□□□ 0.35
PCDH1-201ENST00000287008 TAPBPO15533 448 aa17.22■□□□□ 0.35
PCDH1-201ENST00000287008 SELPLGQ14242 412 aa17.22■□□□□ 0.35
PCDH1-201ENST00000287008 FAM76BQ5HYJ3 339 aa17.22■□□□□ 0.35
PCDH1-201ENST00000287008 KIAA0907Q7Z7F0 614 aaPredicted RBP17.22■□□□□ 0.35
PCDH1-201ENST00000287008 OR6Q1Q8NGQ2 317 aa17.22■□□□□ 0.35
PCDH1-201ENST00000287008 OR2T11Q8NH01 316 aa17.22■□□□□ 0.35
PCDH1-201ENST00000287008 FOXN4Q96NZ1 517 aa17.22■□□□□ 0.35
PCDH1-201ENST00000287008 NELFAQ9H3P2 528 aa17.22■□□□□ 0.35
PCDH1-201ENST00000287008 SYNPO2LQ9H987 977 aa17.22■□□□□ 0.35
PCDH1-201ENST00000287008 OR2S2Q9NQN1 319 aa17.22■□□□□ 0.35
PCDH1-201ENST00000287008 DAPP1Q9UN19 280 aa17.22■□□□□ 0.35
PCDH1-201ENST00000287008 IDSB3KWA1 339 aa17.22■□□□□ 0.35
PCDH1-201ENST00000287008 F5H0A9 414 aaPredicted RBP17.22■□□□□ 0.35
PCDH1-201ENST00000287008 B3GALT4O96024 378 aa17.22■□□□□ 0.35
PCDH1-201ENST00000287008 HYAL1Q12794 435 aa17.22■□□□□ 0.35
PCDH1-201ENST00000287008 PLGLAQ15195 96 aa17.22■□□□□ 0.35
PCDH1-201ENST00000287008 PGM2L1Q6PCE3 622 aa17.22■□□□□ 0.35
PCDH1-201ENST00000287008 Q6ZNB5 142 aa17.22■□□□□ 0.35
PCDH1-201ENST00000287008 SLC16A11Q8NCK7 471 aa17.22■□□□□ 0.35
PCDH1-201ENST00000287008 CHTF18Q8WVB6 975 aa17.22■□□□□ 0.35
PCDH1-201ENST00000287008 ASB17Q8WXJ9 295 aa17.22■□□□□ 0.35
PCDH1-201ENST00000287008 C20orf27Q9GZN8 174 aa17.22■□□□□ 0.35
PCDH1-201ENST00000287008 INPP5EQ9NRR6 644 aa17.22■□□□□ 0.35
PCDH1-201ENST00000287008 MRPL15Q9P015 296 aaKnown RBP17.22■□□□□ 0.35
PCDH1-201ENST00000287008 MYEF2Q9P2K5 600 aaKnown RBP17.22■□□□□ 0.35
PCDH1-201ENST00000287008 LRIT2A6NDA9 550 aa17.21■□□□□ 0.35
PCDH1-201ENST00000287008 PLPP1O14494 284 aa17.21■□□□□ 0.35
PCDH1-201ENST00000287008 ATP1B3P54709 279 aa17.21■□□□□ 0.35
PCDH1-201ENST00000287008 CARD18P57730 90 aa17.21■□□□□ 0.35
PCDH1-201ENST00000287008 ADARB1P78563 741 aaKnown RBP17.21■□□□□ 0.35
PCDH1-201ENST00000287008 ACVR1Q04771 509 aa17.21■□□□□ 0.35
PCDH1-201ENST00000287008 TMEM163Q8TC26 289 aa17.21■□□□□ 0.35
PCDH1-201ENST00000287008 EDEM2Q9BV94 578 aa17.21■□□□□ 0.35
PCDH1-201ENST00000287008 NRSN2Q9GZP1 204 aa17.21■□□□□ 0.35
PCDH1-201ENST00000287008 ZNF223Q9UK11 482 aaPredicted RBP17.21■□□□□ 0.35
PCDH1-201ENST00000287008 A0A1B0GWA3 101 aa17.21■□□□□ 0.35
PCDH1-201ENST00000287008 AKR1C4P17516 323 aa17.21■□□□□ 0.35
PCDH1-201ENST00000287008 PTH2RP49190 550 aa17.21■□□□□ 0.35
PCDH1-201ENST00000287008 OTUD1Q5VV17 481 aaPredicted RBP17.21■□□□□ 0.35
PCDH1-201ENST00000287008 ELOVL3Q9HB03 270 aa17.21■□□□□ 0.35
PCDH1-201ENST00000287008 ANKRD10Q9NXR5 420 aa17.21■□□□□ 0.35
PCDH1-201ENST00000287008 RHBDD3Q9Y3P4 386 aa17.21■□□□□ 0.35
PCDH1-201ENST00000287008 RBM39Q14498 530 aaKnown RBP17.21■□□□□ 0.35
PCDH1-201ENST00000287008 SLC22A6Q4U2R8 563 aa17.21■□□□□ 0.35
PCDH1-201ENST00000287008 KCTD20Q7Z5Y7 419 aa17.21■□□□□ 0.35
PCDH1-201ENST00000287008 ITFG2Q969R8 447 aa17.21■□□□□ 0.35
PCDH1-201ENST00000287008 COQ10AQ96MF6 247 aa17.21■□□□□ 0.35
PCDH1-201ENST00000287008 CNOT2Q9NZN8 540 aaKnown RBP17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms