RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 RORAP35398 523 aa3.41□□□□□ -1.86
CCDC54-201ENST00000261058 ATP5C1P36542 298 aaKnown RBP3.41□□□□□ -1.86
CCDC54-201ENST00000261058 RAB9AP51151 201 aa3.41□□□□□ -1.86
CCDC54-201ENST00000261058 ZNF33BQ06732 778 aa3.41□□□□□ -1.86
CCDC54-201ENST00000261058 BST1Q10588 318 aa3.41□□□□□ -1.86
CCDC54-201ENST00000261058 XRCC4Q13426 336 aa3.41□□□□□ -1.86
CCDC54-201ENST00000261058 SELPLGQ14242 412 aa3.41□□□□□ -1.86
CCDC54-201ENST00000261058 ALX1Q15699 326 aa3.41□□□□□ -1.86
CCDC54-201ENST00000261058 LTB4RQ15722 352 aa3.41□□□□□ -1.86
CCDC54-201ENST00000261058 USF2Q15853 346 aaPredicted RBP3.41□□□□□ -1.86
CCDC54-201ENST00000261058 HNRNPA1L2Q32P51 320 aaKnown RBP3.41□□□□□ -1.86
CCDC54-201ENST00000261058 EIPR1Q53HC9 387 aa3.41□□□□□ -1.86
CCDC54-201ENST00000261058 RNLSQ5VYX0 342 aa3.41□□□□□ -1.86
CCDC54-201ENST00000261058 NIPAL3Q6P499 406 aa3.41□□□□□ -1.86
CCDC54-201ENST00000261058 LRRC31Q6UY01 552 aa3.41□□□□□ -1.86
CCDC54-201ENST00000261058 Q6ZPB1 254 aaPredicted RBP3.41□□□□□ -1.86
CCDC54-201ENST00000261058 TRMT10CQ7L0Y3 403 aaKnown RBP3.41□□□□□ -1.86
CCDC54-201ENST00000261058 LRRC6Q86X45 466 aa3.41□□□□□ -1.86
CCDC54-201ENST00000261058 HIPK1Q86Z02 1210 aa3.41□□□□□ -1.86
CCDC54-201ENST00000261058 CDKL3Q8IVW4 592 aaPredicted RBP3.41□□□□□ -1.86
CCDC54-201ENST00000261058 OFCC1Q8IZS5 231 aa3.41□□□□□ -1.86
CCDC54-201ENST00000261058 LYG1Q8N1E2 194 aa3.41□□□□□ -1.86
CCDC54-201ENST00000261058 FNDC8Q8TC99 324 aa3.41□□□□□ -1.86
CCDC54-201ENST00000261058 LKAAEAR1Q8TD35 194 aa3.41□□□□□ -1.86
CCDC54-201ENST00000261058 PDCD6IPQ8WUM4 868 aaKnown RBP3.41□□□□□ -1.86
CCDC54-201ENST00000261058 LHX4Q969G2 390 aa3.41□□□□□ -1.86
CCDC54-201ENST00000261058 TRNT1Q96Q11 434 aaKnown RBP3.41□□□□□ -1.86
CCDC54-201ENST00000261058 PANX2Q96RD6 677 aa3.41□□□□□ -1.86
CCDC54-201ENST00000261058 RANBP9Q96S59 729 aa3.41□□□□□ -1.86
CCDC54-201ENST00000261058 CYP3A43Q9HB55 503 aa3.41□□□□□ -1.86
CCDC54-201ENST00000261058 SGK2Q9HBY8 427 aa3.41□□□□□ -1.86
CCDC54-201ENST00000261058 ZFP14Q9HCL3 533 aa3.41□□□□□ -1.86
CCDC54-201ENST00000261058 YAE1D1Q9NRH1 226 aa3.41□□□□□ -1.86
CCDC54-201ENST00000261058 UXTQ9UBK9 157 aaPredicted RBP3.41□□□□□ -1.86
CCDC54-201ENST00000261058 TMCO1Q9UM00 188 aa3.41□□□□□ -1.86
CCDC54-201ENST00000261058 CA5BQ9Y2D0 317 aa3.41□□□□□ -1.86
CCDC54-201ENST00000261058 IBTKQ9P2D0 1353 aaPredicted RBP3.4□□□□□ -1.86
CCDC54-201ENST00000261058 TTC21AQ8NDW8 1320 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 TRAV26-1A0A087WT03 109 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 SNTNA6NMZ2 147 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 IQCF5A8MTL0 148 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 SUPT3HB4E1H0 165 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 HIP1O00291 1037 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 EI24O14681 340 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 CFLARO15519 480 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 TRAPPC3O43617 180 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 TYROBPO43914 113 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 ZNF253O75346 499 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 MYO1DO94832 1006 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 NUDT14O95848 222 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 KRT7P08729 469 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 WNT2P09544 360 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 SRMP19623 302 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 PAICSP22234 425 aaKnown RBP3.4□□□□□ -1.87
CCDC54-201ENST00000261058 CDH4P55283 916 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 ENPEPQ07075 957 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 SMARCB1Q12824 385 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 PPIL2Q13356 520 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 RFTN1Q14699 578 aaPredicted RBP3.4□□□□□ -1.87
CCDC54-201ENST00000261058 ZNF311Q5JNZ3 666 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 RABGAP1LQ5R372 815 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 SAPCD1Q5SSQ6 148 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 ATF7IP2Q5U623 682 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 TTC23Q5W5X9 447 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 SPECC1LQ69YQ0 1117 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 SPINK14Q6IE38 97 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 BLOC1S2Q6QNY1 142 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 APOOLQ6UXV4 268 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 CCDC36Q8IYA8 594 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 UBQLNLQ8IYU4 475 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 ZNF683Q8IZ20 524 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 SLC39A11Q8N1S5 342 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 LIX1Q8N485 282 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 ZNF680Q8NEM1 530 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 WDR36Q8NI36 951 aaKnown RBP3.4□□□□□ -1.87
CCDC54-201ENST00000261058 PHOSPHO2Q8TCD6 241 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 GIPC3Q8TF64 312 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 OSTF1Q92882 214 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 PRRC1Q96M27 445 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 CYTH2Q99418 400 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 BPIFA3Q9BQP9 254 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 FRMD8P1Q9BZ68 369 aaPredicted RBP3.4□□□□□ -1.87
CCDC54-201ENST00000261058 OR52A5Q9H2C5 316 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 BLZF1Q9H2G9 400 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 RHBGQ9H310 441 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 RGCCQ9H4X1 137 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 TMEM185BQ9H7F4 350 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 TREM1Q9NP99 234 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 MRPL40Q9NQ50 206 aaKnown RBP3.4□□□□□ -1.87
CCDC54-201ENST00000261058 C12orf4Q9NQ89 552 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 MRPL39Q9NYK5 338 aaKnown RBP3.4□□□□□ -1.87
CCDC54-201ENST00000261058 DHRS4-AS1Q9P1J3 65 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 BCAP29Q9UHQ4 241 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 FOXJ3Q9UPW0 622 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 OR10H1Q9Y4A9 318 aa3.4□□□□□ -1.87
CCDC54-201ENST00000261058 TRAV25A0A0B4J276 109 aa3.39□□□□□ -1.87
CCDC54-201ENST00000261058 A0A1W2PQ72 361 aa3.39□□□□□ -1.87
CCDC54-201ENST00000261058 RNF222A6NCQ9 220 aa3.39□□□□□ -1.87
CCDC54-201ENST00000261058 LRIT2A6NDA9 550 aa3.39□□□□□ -1.87
CCDC54-201ENST00000261058 TMEM210A6NLX4 147 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms