RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 HS6ST2Q96MM7 605 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 DPCDQ9BVM2 203 aaPredicted RBP9.84□□□□□ -0.83
USP28-201ENST00000003302 CRISPLD2Q9H0B8 497 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 A0A1W2PQ72 361 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 EPOPA6NHQ4 379 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 POM121CA8CG34 1229 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 K7EQS6 105 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 TCRBP04435 133 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 ERP29P30040 261 aaKnown RBP9.84□□□□□ -0.83
USP28-201ENST00000003302 ADAM15Q13444 863 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 OR4C3Q8NH37 302 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 AP3S1Q92572 193 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 OTUB2Q96DC9 234 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 SCMH1Q96GD3 660 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 SEC22CQ9BRL7 303 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 RTN4RQ9BZR6 473 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 TEKT2Q9UIF3 430 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 CACNG2Q9Y698 323 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 OR6C68A6NDL8 312 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 MEIS3P1A6NDR6 274 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 SYT5O00445 386 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 SMAD9O15198 467 aaKnown RBP9.84□□□□□ -0.83
USP28-201ENST00000003302 EFCAB14O75071 495 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 PROS1P07225 676 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 NT5EP21589 574 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 GPR18Q14330 331 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 CSRP2Q16527 193 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 KIRREL2Q6UWL6 708 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 OR8H3Q8N146 312 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 LNX2Q8N448 690 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 OR8K3Q8NH51 312 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 GIMAP1Q8WWP7 306 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 AHCYL2Q96HN2 611 aaKnown RBP9.84□□□□□ -0.83
USP28-201ENST00000003302 SPACA7Q96KW9 195 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 CD180Q99467 661 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 ZNF350Q9GZX5 532 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 BRD7Q9NPI1 651 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 OR6C2Q9NZP2 312 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 KLHL21Q9UJP4 597 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 SLC17A4Q9Y2C5 497 aa9.84□□□□□ -0.83
USP28-201ENST00000003302 A0A1B0GWA3 101 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 ZNF593O00488 134 aaPredicted RBP9.83□□□□□ -0.84
USP28-201ENST00000003302 OIP5O43482 229 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 SLC43A1O75387 559 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 DDX6P26196 483 aaKnown RBP eCLIP9.83□□□□□ -0.84
USP28-201ENST00000003302 ACTR1BP42025 376 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 PITPNBP48739 271 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 INPP1P49441 399 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 ACTR1AP61163 376 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 PSG6Q00889 435 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 TNFRSF17Q02223 184 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 PXKQ7Z7A4 578 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 OR11G2Q8NGC1 345 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 AKAP1Q92667 903 aaKnown RBP eCLIP9.83□□□□□ -0.84
USP28-201ENST00000003302 ATOH1Q92858 354 aaPredicted RBP9.83□□□□□ -0.84
USP28-201ENST00000003302 MESP1Q9BRJ9 268 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 C1QTNF2Q9BXJ5 285 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 CFHR5Q9BXR6 569 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.83□□□□□ -0.84
USP28-201ENST00000003302 H2AFY2Q9P0M6 372 aaPredicted RBP9.83□□□□□ -0.84
USP28-201ENST00000003302 TEX13CA0A0J9YWL9 993 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 CENPBD1B2RD01 187 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 UCHL1P09936 223 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 STAT5AP42229 794 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.83□□□□□ -0.84
USP28-201ENST00000003302 RUNX3Q13761 415 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 NRROSQ86YC3 692 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 OR4D10Q8NGI6 311 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 SLC25A38Q96DW6 304 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 MS4A4EQ96PG1 132 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 APOOQ9BUR5 198 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 ULBP3Q9BZM4 244 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 PRSS38A1L453 326 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 OR6C74A6NCV1 312 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 PTP4A3O75365 173 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 TRAPPC2P0DI81 140 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 TRAPPC2BP0DI82 140 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 TYRP1P17643 537 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 ACAA2P42765 397 aaKnown RBP9.83□□□□□ -0.84
USP28-201ENST00000003302 VEGFCP49767 419 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 RPL6Q02878 288 aaKnown RBP9.83□□□□□ -0.84
USP28-201ENST00000003302 ZSWIM7Q19AV6 140 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 PRRT3Q5FWE3 981 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 SFRP5Q5T4F7 317 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 CMTM4Q8IZR5 234 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 ZNF680Q8NEM1 530 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 GAL3ST1Q99999 423 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 RSPH9Q9H1X1 276 aaPredicted RBP9.83□□□□□ -0.84
USP28-201ENST00000003302 CMC2Q9NRP2 79 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 NCKAP1Q9Y2A7 1128 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 C1QTNF3-AMACRE9PGA6 284 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 FOXS1O43638 330 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 PLPP2O43688 288 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 RPP14O95059 124 aaKnown RBP9.83□□□□□ -0.84
USP28-201ENST00000003302 CBX7O95931 251 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 EPXP11678 715 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 NID1P14543 1247 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 CAMK2DQ13557 499 aa9.83□□□□□ -0.84
USP28-201ENST00000003302 YOD1Q5VVQ6 348 aaPredicted RBP9.83□□□□□ -0.84
USP28-201ENST00000003302 DMKNQ6E0U4 476 aaPredicted RBP9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms