RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 CBFBQ13951 182 aa18.29■□□□□ 0.52
CLN3-250ENST00000636839 KEAP1Q14145 624 aa18.29■□□□□ 0.52
CLN3-250ENST00000636839 TTC33Q6PID6 262 aaPredicted RBP18.29■□□□□ 0.52
CLN3-250ENST00000636839 MPP4Q96JB8 637 aa18.29■□□□□ 0.52
CLN3-250ENST00000636839 FAM117AQ9C073 453 aa18.29■□□□□ 0.52
CLN3-250ENST00000636839 PNPLA3Q9NST1 481 aa18.29■□□□□ 0.52
CLN3-250ENST00000636839 HPF1Q9NWY4 346 aa18.29■□□□□ 0.52
CLN3-250ENST00000636839 STMN3Q9NZ72 180 aa18.29■□□□□ 0.52
CLN3-250ENST00000636839 PPP4R1LQ9P1A2 415 aa18.29■□□□□ 0.52
CLN3-250ENST00000636839 WIF1Q9Y5W5 379 aa18.29■□□□□ 0.52
CLN3-250ENST00000636839 CNTRLQ7Z7A1 2325 aa18.29■□□□□ 0.52
CLN3-250ENST00000636839 ARGFXA6NJG6 315 aa18.28■□□□□ 0.52
CLN3-250ENST00000636839 A6NL46 340 aa18.28■□□□□ 0.52
CLN3-250ENST00000636839 ZAR1LA6NP61 321 aa18.28■□□□□ 0.52
CLN3-250ENST00000636839 FPR3P25089 353 aa18.28■□□□□ 0.52
CLN3-250ENST00000636839 GGT2P36268 569 aa18.28■□□□□ 0.52
CLN3-250ENST00000636839 SLC6A8P48029 635 aa18.28■□□□□ 0.52
CLN3-250ENST00000636839 FOXK1P85037 733 aa18.28■□□□□ 0.52
CLN3-250ENST00000636839 CLEC12AQ5QGZ9 265 aa18.28■□□□□ 0.52
CLN3-250ENST00000636839 ZNF227Q86WZ6 799 aa18.28■□□□□ 0.52
CLN3-250ENST00000636839 RNF113BQ8IZP6 322 aaKnown RBP18.28■□□□□ 0.52
CLN3-250ENST00000636839 LRRC17Q8N6Y2 441 aa18.28■□□□□ 0.52
CLN3-250ENST00000636839 WDSUB1Q8N9V3 476 aa18.28■□□□□ 0.52
CLN3-250ENST00000636839 OR13C2Q8NGS9 318 aa18.28■□□□□ 0.52
CLN3-250ENST00000636839 OSGIN1Q9UJX0 560 aa18.28■□□□□ 0.52
CLN3-250ENST00000636839 VDAC3Q9Y277 283 aa18.28■□□□□ 0.52
CLN3-250ENST00000636839 ELOA3DA6NLF2 546 aaPredicted RBP18.28■□□□□ 0.52
CLN3-250ENST00000636839 TP53I11O14683 189 aa18.28■□□□□ 0.52
CLN3-250ENST00000636839 PGCP20142 388 aa18.28■□□□□ 0.52
CLN3-250ENST00000636839 FXYD6P3P58550 94 aa18.28■□□□□ 0.52
CLN3-250ENST00000636839 ESRRGP62508 458 aa18.28■□□□□ 0.52
CLN3-250ENST00000636839 EGR4Q05215 589 aa18.28■□□□□ 0.52
CLN3-250ENST00000636839 COX10Q12887 443 aa18.28■□□□□ 0.52
CLN3-250ENST00000636839 SMN1Q16637 294 aaKnown RBP18.28■□□□□ 0.52
CLN3-250ENST00000636839 ELOA3BQ3SY89 546 aa18.28■□□□□ 0.52
CLN3-250ENST00000636839 ENTHD1Q8IYW4 607 aa18.28■□□□□ 0.52
CLN3-250ENST00000636839 ELOA3Q8NG57 546 aa18.28■□□□□ 0.52
CLN3-250ENST00000636839 FAM81AQ8TBF8 368 aa18.28■□□□□ 0.52
CLN3-250ENST00000636839 HS6ST2Q96MM7 605 aa18.28■□□□□ 0.52
CLN3-250ENST00000636839 ING2Q9H160 280 aa18.28■□□□□ 0.52
CLN3-250ENST00000636839 RNF6Q9Y252 685 aa18.28■□□□□ 0.52
CLN3-250ENST00000636839 FRYQ5TBA9 3013 aa18.27■□□□□ 0.52
CLN3-250ENST00000636839 A0A0G2JMM0 328 aa18.27■□□□□ 0.52
CLN3-250ENST00000636839 A0A1W2PPB8 328 aa18.27■□□□□ 0.52
CLN3-250ENST00000636839 A0A1W2PRS3 328 aa18.27■□□□□ 0.52
CLN3-250ENST00000636839 MAGEA13PA6NCF6 341 aa18.27■□□□□ 0.52
CLN3-250ENST00000636839 ENO4A6NNW6 628 aa18.27■□□□□ 0.52
CLN3-250ENST00000636839 KIR3DP1A8MWS1 328 aa18.27■□□□□ 0.52
CLN3-250ENST00000636839 ENDOUP21128 410 aaKnown RBP18.27■□□□□ 0.52
CLN3-250ENST00000636839 CDK5R2Q13319 367 aa18.27■□□□□ 0.52
CLN3-250ENST00000636839 C1QL3Q5VWW1 255 aa18.27■□□□□ 0.52
CLN3-250ENST00000636839 ACSM5Q6NUN0 579 aa18.27■□□□□ 0.52
CLN3-250ENST00000636839 MISPQ8IVT2 679 aa18.27■□□□□ 0.52
CLN3-250ENST00000636839 PAQR8Q8TEZ7 354 aa18.27■□□□□ 0.52
CLN3-250ENST00000636839 SLC39A7Q92504 469 aa18.27■□□□□ 0.52
CLN3-250ENST00000636839 SGCDQ92629 289 aa18.27■□□□□ 0.52
CLN3-250ENST00000636839 ZNF226Q9NYT6 803 aa18.27■□□□□ 0.52
CLN3-250ENST00000636839 TRAV27A0A087WT01 109 aa18.27■□□□□ 0.51
CLN3-250ENST00000636839 CDH15P55291 814 aa18.27■□□□□ 0.51
CLN3-250ENST00000636839 CTBP2P56545 445 aa18.27■□□□□ 0.51
CLN3-250ENST00000636839 SWT1Q5T5J6 900 aaKnown RBP18.27■□□□□ 0.51
CLN3-250ENST00000636839 SLC22A10Q63ZE4 541 aa18.27■□□□□ 0.51
CLN3-250ENST00000636839 LINC00696Q6ZRV3 163 aa18.27■□□□□ 0.51
CLN3-250ENST00000636839 OR51A7Q8NH64 312 aa18.27■□□□□ 0.51
CLN3-250ENST00000636839 APH1BQ8WW43 257 aa18.27■□□□□ 0.51
CLN3-250ENST00000636839 TAS2R10Q9NYW0 307 aa18.27■□□□□ 0.51
CLN3-250ENST00000636839 PLA2G3Q9NZ20 509 aa18.27■□□□□ 0.51
CLN3-250ENST00000636839 ZC3H12DA2A288 527 aaKnown RBP18.26■□□□□ 0.51
CLN3-250ENST00000636839 ANKUB1A6NFN9 424 aa18.26■□□□□ 0.51
CLN3-250ENST00000636839 UNC119BA6NIH7 251 aa18.26■□□□□ 0.51
CLN3-250ENST00000636839 SAGP10523 405 aaPredicted RBP18.26■□□□□ 0.51
CLN3-250ENST00000636839 GP1BBP13224 206 aa18.26■□□□□ 0.51
CLN3-250ENST00000636839 GSTM3P21266 225 aa18.26■□□□□ 0.51
CLN3-250ENST00000636839 FMO3P31513 532 aa18.26■□□□□ 0.51
CLN3-250ENST00000636839 RBM34P42696 430 aaKnown RBP18.26■□□□□ 0.51
CLN3-250ENST00000636839 AIMP2Q13155 320 aaKnown RBP18.26■□□□□ 0.51
CLN3-250ENST00000636839 GINS1Q14691 196 aa18.26■□□□□ 0.51
CLN3-250ENST00000636839 TBC1D25Q3MII6 688 aa18.26■□□□□ 0.51
CLN3-250ENST00000636839 GXYLT1Q4G148 440 aa18.26■□□□□ 0.51
CLN3-250ENST00000636839 SPINK14Q6IE38 97 aa18.26■□□□□ 0.51
CLN3-250ENST00000636839 RASSF6Q6ZTQ3 369 aa18.26■□□□□ 0.51
CLN3-250ENST00000636839 ADGRG3Q86Y34 549 aa18.26■□□□□ 0.51
CLN3-250ENST00000636839 CYP4Z2PQ8N1L4 340 aa18.26■□□□□ 0.51
CLN3-250ENST00000636839 OR5M1Q8NGP8 315 aa18.26■□□□□ 0.51
CLN3-250ENST00000636839 FBLIM1Q8WUP2 373 aa18.26■□□□□ 0.51
CLN3-250ENST00000636839 KTI12Q96EK9 354 aaPredicted RBP18.26■□□□□ 0.51
CLN3-250ENST00000636839 APOL4Q9BPW4 351 aa18.26■□□□□ 0.51
CLN3-250ENST00000636839 SCNM1Q9BWG6 230 aa18.26■□□□□ 0.51
CLN3-250ENST00000636839 CH25HO95992 272 aa18.25■□□□□ 0.51
CLN3-250ENST00000636839 GIPRP48546 466 aa18.25■□□□□ 0.51
CLN3-250ENST00000636839 IL18R1Q13478 541 aa18.25■□□□□ 0.51
CLN3-250ENST00000636839 FHL1Q13642 323 aa18.25■□□□□ 0.51
CLN3-250ENST00000636839 MAD2L1BPQ15013 274 aaPredicted RBP18.25■□□□□ 0.51
CLN3-250ENST00000636839 TMEM154Q6P9G4 183 aa18.25■□□□□ 0.51
CLN3-250ENST00000636839 ZNF620Q6ZNG0 422 aa18.25■□□□□ 0.51
CLN3-250ENST00000636839 TMPRSS11FQ6ZWK6 438 aa18.25■□□□□ 0.51
CLN3-250ENST00000636839 CCDC103Q8IW40 242 aa18.25■□□□□ 0.51
CLN3-250ENST00000636839 CLEC1AQ8NC01 280 aa18.25■□□□□ 0.51
CLN3-250ENST00000636839 OR2M3Q8NG83 312 aa18.25■□□□□ 0.51
CLN3-250ENST00000636839 SAMD8Q96LT4 415 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms