RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 SNX11Q9Y5W9 270 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 CSF1P09603 554 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 ZNF35P13682 527 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 ZNF14P17017 642 aaPredicted RBP13.07□□□□□ -0.32
CPSF1-212ENST00000616140 EMP2P54851 167 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 CLDN12P56749 244 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 CRMP1Q14194 572 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 ARL6IP1Q15041 203 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 SLC6A19Q695T7 634 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 PXKQ7Z7A4 578 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 CHTF18Q8WVB6 975 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 GHSRQ92847 366 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 TM4SF18Q96CE8 201 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 AMDHD1Q96NU7 426 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 POU2F3Q9UKI9 436 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 YY2O15391 372 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 CACNG3O60359 315 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 ABLIM3O94929 683 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 IGLV3-25P01717 112 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 P04436 131 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 OR8U9P0C7N5 309 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 THBS2P35442 1172 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 SLC35A2P78381 396 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 NFATC4Q14934 902 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 OR7A5Q15622 319 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 LRRC26Q2I0M4 334 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 TNFRSF13CQ96RJ3 184 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 CDC6Q99741 560 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 TMEM168Q9H0V1 697 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 NOX3Q9HBY0 568 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 B4GALT7Q9UBV7 327 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 ATG4BQ9Y4P1 393 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 SCN9AQ15858 1988 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 GPRIN2O60269 458 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 LCATP04180 440 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 JUNBP17275 347 aaPredicted RBP13.07□□□□□ -0.32
CPSF1-212ENST00000616140 CR2P20023 1033 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 TUBG1P23258 451 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 EVI2BP34910 448 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 CASP3P42574 277 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 PDE7AQ13946 482 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 LCN10Q6JVE6 187 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 TSSK4Q6SA08 328 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 TPRA1Q86W33 373 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 KIAA1143Q96AT1 154 aaPredicted RBP13.07□□□□□ -0.32
CPSF1-212ENST00000616140 SLCO4A1Q96BD0 722 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 ZNF582Q96NG8 517 aaPredicted RBP13.07□□□□□ -0.32
CPSF1-212ENST00000616140 ZIC5Q96T25 663 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 TMEM38AQ9H6F2 299 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 LTB4R2Q9NPC1 389 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 RBFOX1Q9NWB1 397 aaKnown RBP13.07□□□□□ -0.32
CPSF1-212ENST00000616140 CLEC2DQ9UHP7 191 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 SHC1P29353 583 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 ARF1P84077 181 aaKnown RBP13.06□□□□□ -0.32
CPSF1-212ENST00000616140 CYCSP99999 105 aaKnown RBP13.06□□□□□ -0.32
CPSF1-212ENST00000616140 EFR3AQ14156 821 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 CELF2-AS1Q8N7Q2 184 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 SLC16A11Q8NCK7 471 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 OLIG1Q8TAK6 271 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 SLC7A13Q8TCU3 470 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 TM7SF3Q9NS93 570 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 OSGIN1Q9UJX0 560 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 CABIN1Q9Y6J0 2220 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 GVINP1Q7Z2Y8 2422 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 TMEM72A0PK05 275 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 NUPL2O15504 423 aaKnown RBP13.06□□□□□ -0.32
CPSF1-212ENST00000616140 FZD7O75084 574 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 HTR3BO95264 441 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 SBK3P0C264 359 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 AKAIN1P0CW23 69 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 NPR2P20594 1047 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 MECP2P51608 486 aaKnown RBP13.06□□□□□ -0.32
CPSF1-212ENST00000616140 AKR1C2P52895 323 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 FXYD4P59646 89 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 MRPL49Q13405 166 aaKnown RBP13.06□□□□□ -0.32
CPSF1-212ENST00000616140 ZNF750Q32MQ0 723 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 AGAP7PQ5VUJ5 663 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 ANKRD34AQ69YU3 496 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 FAM71E1Q6IPT2 247 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 ZNF100Q8IYN0 542 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 ARL14Q8N4G2 192 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 PRSS16Q9NQE7 514 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 SLC25A37Q9NYZ2 338 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 KDM4EB2RXH2 506 aaPredicted RBP13.06□□□□□ -0.32
CPSF1-212ENST00000616140 IFNA5P01569 189 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 FUCA1P04066 466 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 CLEC2LP0C7M8 214 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 OPRD1P41143 372 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 OR1D4P47884 311 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 ACY1Q03154 408 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 SPOCK1Q08629 439 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 GPR18Q14330 331 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 TMEM244Q5VVB8 128 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 ABHD12BQ7Z5M8 362 aaPredicted RBP13.06□□□□□ -0.32
CPSF1-212ENST00000616140 SIMC1Q8NDZ2 872 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 SYT3Q9BQG1 590 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 C7orf50Q9BRJ6 194 aaKnown RBP13.06□□□□□ -0.32
CPSF1-212ENST00000616140 IKZF5Q9H5V7 419 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 BOLA1Q9Y3E2 137 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 RHBDD3Q9Y3P4 386 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms