RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 PEX12O00623 359 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 CDC42EP2O14613 210 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 GREM1O60565 184 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 RGS11O94810 467 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 OLFM2O95897 454 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 DBIP07108 87 aaKnown RBP11.7□□□□□ -0.54
LIG1-221ENST00000613670 SBK2P0C263 348 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 DUSP5Q16690 384 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 METTL11BQ5VVY1 283 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 TPRA1Q86W33 373 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 PAQR7Q86WK9 346 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 CHST4Q8NCG5 386 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 OR6N2Q8NGY6 317 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 OR5J2Q8NH18 312 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 C6orf106Q9H6K1 298 aaPredicted RBP11.7□□□□□ -0.54
LIG1-221ENST00000613670 MED17Q9NVC6 651 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 MYEF2Q9P2K5 600 aaKnown RBP11.7□□□□□ -0.54
LIG1-221ENST00000613670 NDOR1Q9UHB4 597 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 TNS1Q9HBL0 1735 aaKnown RBP11.7□□□□□ -0.54
LIG1-221ENST00000613670 PRAMEF27A3QJZ7 478 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 KDM4EB2RXH2 506 aaPredicted RBP11.7□□□□□ -0.54
LIG1-221ENST00000613670 GPR171O14626 319 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 CEBPBP17676 345 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 PCBP4P57723 403 aaKnown RBP11.7□□□□□ -0.54
LIG1-221ENST00000613670 GAS6Q14393 721 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 PDGFRLQ15198 375 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 DEFB115Q30KQ5 88 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 SLC48A1Q6P1K1 146 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 NIPAL3Q6P499 406 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 C19orf48Q6RUI8 117 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 C9orf62Q8N4C0 152 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 C17orf47Q8NEP4 570 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 SYNPRQ8TBG9 265 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 SENP5Q96HI0 755 aaPredicted RBP11.7□□□□□ -0.54
LIG1-221ENST00000613670 DERL3Q96Q80 235 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 HHIPQ96QV1 700 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 C20orf85Q9H1P6 137 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 ISYNA1Q9NPH2 558 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 LYARQ9NX58 379 aaKnown RBP11.7□□□□□ -0.54
LIG1-221ENST00000613670 LOC285556D6RIA3 1793 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 DSPPQ9NZW4 1301 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 ZSWIM8A7E2V4 1837 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 SHISA3A0PJX4 238 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 ANXA7P20073 488 aaKnown RBP11.69□□□□□ -0.54
LIG1-221ENST00000613670 UBE2MP61081 183 aaKnown RBP11.69□□□□□ -0.54
LIG1-221ENST00000613670 TRMT12Q53H54 448 aaKnown RBP11.69□□□□□ -0.54
LIG1-221ENST00000613670 AADACL4Q5VUY2 407 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 ARSKQ6UWY0 536 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 NSMAFQ92636 917 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 MS4A6EQ96DS6 147 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 COMMD4Q9H0A8 199 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 BCL2L10Q9HD36 194 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 NOX4Q9NPH5 578 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 MAN2C1Q9NTJ4 1040 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 SPHK1Q9NYA1 384 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 SLC6A1P30531 599 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 P2RY2P41231 377 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 ERVK-25P63136 954 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 PCGF3Q3KNV8 242 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 PRRT3Q5FWE3 981 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 DCST2Q5T1A1 773 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 ARHGAP11AQ6P4F7 1023 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 ZNF836Q6ZNA1 936 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 COMMD2Q86X83 199 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 SLC35F2Q8IXU6 374 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 RBPMSQ93062 196 aaKnown RBP11.69□□□□□ -0.54
LIG1-221ENST00000613670 ZNF436Q9C0F3 470 aaPredicted RBP11.69□□□□□ -0.54
LIG1-221ENST00000613670 CREBZFQ9NS37 354 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 ADAM29Q9UKF5 820 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 A0A1W2PQU0 124 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 ECDO95905 644 aaPredicted RBP11.69□□□□□ -0.54
LIG1-221ENST00000613670 ARHGDIBP52566 201 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 ART1P52961 327 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 ERVFC1P60507 584 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 TRA2BP62995 288 aaKnown RBP11.69□□□□□ -0.54
LIG1-221ENST00000613670 HTR4Q13639 388 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 ENPP2Q13822 863 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 LRRN1Q6UXK5 716 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 TMEM91Q6ZNR0 172 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 CFAP77Q6ZQR2 320 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 OR7G2Q8NG99 324 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 OR11H7Q8NGC8 314 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 OR52I2Q8NH67 350 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 ANGPTL6Q8NI99 470 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 SFXN5Q8TD22 340 aa11.69□□□□□ -0.54
LIG1-221ENST00000613670 SIRT4Q9Y6E7 314 aaPredicted RBP11.69□□□□□ -0.54
LIG1-221ENST00000613670 TVP23AA6NH52 213 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 GOSR2O14653 212 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 TP53P04637 393 aaPredicted RBP11.68□□□□□ -0.54
LIG1-221ENST00000613670 LIPCP11150 499 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 MAGEB1P43366 347 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 TAF13Q15543 124 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 ST3GAL2Q16842 350 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 MFSD12Q6NUT3 480 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 OR4D9Q8NGE8 314 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 HCAR1Q9BXC0 346 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 TMEM168Q9H0V1 697 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 STARD5Q9NSY2 213 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 TAS2R3Q9NYW6 316 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 ABRACLQ9P1F3 81 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms