RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 PLXDC2Q6UX71 529 aa14.5□□□□□ -0.09
LSM4-206ENST00000600289 MEX3BQ6ZN04 569 aaKnown RBP14.5□□□□□ -0.09
LSM4-206ENST00000600289 ZNF836Q6ZNA1 936 aa14.5□□□□□ -0.09
LSM4-206ENST00000600289 GRINAQ7Z429 371 aa14.5□□□□□ -0.09
LSM4-206ENST00000600289 HMGN2P46Q86SG4 172 aa14.5□□□□□ -0.09
LSM4-206ENST00000600289 GCNT2Q8N0V5 402 aa14.5□□□□□ -0.09
LSM4-206ENST00000600289 INTS12Q96CB8 462 aaKnown RBP14.5□□□□□ -0.09
LSM4-206ENST00000600289 CGREF1Q99674 301 aa14.5□□□□□ -0.09
LSM4-206ENST00000600289 CCDC106Q9BWC9 280 aa14.5□□□□□ -0.09
LSM4-206ENST00000600289 SPATA9Q9BWV2 254 aa14.5□□□□□ -0.09
LSM4-206ENST00000600289 TMEM185BQ9H7F4 350 aa14.5□□□□□ -0.09
LSM4-206ENST00000600289 COQ10BQ9H8M1 238 aa14.5□□□□□ -0.09
LSM4-206ENST00000600289 TIGARQ9NQ88 270 aa14.5□□□□□ -0.09
LSM4-206ENST00000600289 PACSIN3Q9UKS6 424 aa14.5□□□□□ -0.09
LSM4-206ENST00000600289 MCTS1Q9ULC4 181 aaKnown RBP14.5□□□□□ -0.09
LSM4-206ENST00000600289 ZNF443Q9Y2A4 671 aaPredicted RBP14.5□□□□□ -0.09
LSM4-206ENST00000600289 TNFSF11O14788 317 aa14.49□□□□□ -0.09
LSM4-206ENST00000600289 CXCL13O43927 109 aa14.49□□□□□ -0.09
LSM4-206ENST00000600289 PGM3O95394 542 aa14.49□□□□□ -0.09
LSM4-206ENST00000600289 NPPAP01160 153 aa14.49□□□□□ -0.09
LSM4-206ENST00000600289 PABPC4LP0CB38 370 aaKnown RBP14.49□□□□□ -0.09
LSM4-206ENST00000600289 UQCRBP14927 111 aa14.49□□□□□ -0.09
LSM4-206ENST00000600289 SHC1P29353 583 aa14.49□□□□□ -0.09
LSM4-206ENST00000600289 HTR3AP46098 478 aa14.49□□□□□ -0.09
LSM4-206ENST00000600289 EPS8Q12929 822 aa14.49□□□□□ -0.09
LSM4-206ENST00000600289 TRMT5Q32P41 509 aaKnown RBP14.49□□□□□ -0.09
LSM4-206ENST00000600289 RPS26P11Q5JNZ5 115 aaPredicted RBP14.49□□□□□ -0.09
LSM4-206ENST00000600289 REEP3Q6NUK4 255 aa14.49□□□□□ -0.09
LSM4-206ENST00000600289 CDH24Q86UP0 819 aa14.49□□□□□ -0.09
LSM4-206ENST00000600289 VRK2Q86Y07 508 aa14.49□□□□□ -0.09
LSM4-206ENST00000600289 ZNF563Q8TA94 476 aa14.49□□□□□ -0.09
LSM4-206ENST00000600289 MAL2Q969L2 176 aa14.49□□□□□ -0.09
LSM4-206ENST00000600289 CPNE4Q96A23 557 aaPredicted RBP14.49□□□□□ -0.09
LSM4-206ENST00000600289 C14orf79Q96F83 325 aa14.49□□□□□ -0.09
LSM4-206ENST00000600289 ARMC7Q9H6L4 198 aa14.49□□□□□ -0.09
LSM4-206ENST00000600289 CACYBPQ9HB71 228 aaKnown RBP14.49□□□□□ -0.09
LSM4-206ENST00000600289 SERINC1Q9NRX5 453 aa14.49□□□□□ -0.09
LSM4-206ENST00000600289 GLRX2Q9NS18 164 aa14.49□□□□□ -0.09
LSM4-206ENST00000600289 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.49□□□□□ -0.09
LSM4-206ENST00000600289 SPIN1Q9Y657 262 aaPredicted RBP14.49□□□□□ -0.09
LSM4-206ENST00000600289 MAP1AP78559 2803 aaPredicted RBP14.48□□□□□ -0.09
LSM4-206ENST00000600289 CFAP73A6NFT4 308 aa14.48□□□□□ -0.09
LSM4-206ENST00000600289 C5orf58C9J3I9 102 aa14.48□□□□□ -0.09
LSM4-206ENST00000600289 FBP2O00757 339 aa14.48□□□□□ -0.09
LSM4-206ENST00000600289 DYNC1I1O14576 645 aa14.48□□□□□ -0.09
LSM4-206ENST00000600289 AP3D1O14617 1153 aa14.48□□□□□ -0.09
LSM4-206ENST00000600289 SS18L1O75177 396 aaPredicted RBP14.48□□□□□ -0.09
LSM4-206ENST00000600289 AQP8O94778 261 aa14.48□□□□□ -0.09
LSM4-206ENST00000600289 SYNGR4O95473 234 aa14.48□□□□□ -0.09
LSM4-206ENST00000600289 CD8BP10966 210 aa14.48□□□□□ -0.09
LSM4-206ENST00000600289 SFTPDP35247 375 aa14.48□□□□□ -0.09
LSM4-206ENST00000600289 KIR2DL2P43627 348 aaPredicted RBP14.48□□□□□ -0.09
LSM4-206ENST00000600289 CLK1P49759 484 aaKnown RBP14.48□□□□□ -0.09
LSM4-206ENST00000600289 MAP2K6P52564 334 aa14.48□□□□□ -0.09
LSM4-206ENST00000600289 CDK6Q00534 326 aa14.48□□□□□ -0.09
LSM4-206ENST00000600289 SORDQ00796 357 aa14.48□□□□□ -0.09
LSM4-206ENST00000600289 RBBP4Q09028 425 aa14.48□□□□□ -0.09
LSM4-206ENST00000600289 MERTKQ12866 999 aa14.48□□□□□ -0.09
LSM4-206ENST00000600289 NFYCQ13952 458 aa14.48□□□□□ -0.09
LSM4-206ENST00000600289 ADRM1Q16186 407 aa14.48□□□□□ -0.09
LSM4-206ENST00000600289 ZNF239Q16600 458 aaKnown RBP14.48□□□□□ -0.09
LSM4-206ENST00000600289 ZNF550Q7Z398 422 aa14.48□□□□□ -0.09
LSM4-206ENST00000600289 NET1Q7Z628 596 aaPredicted RBP14.48□□□□□ -0.09
LSM4-206ENST00000600289 RNF128Q8TEB7 428 aa14.48□□□□□ -0.09
LSM4-206ENST00000600289 OSTF1Q92882 214 aa14.48□□□□□ -0.09
LSM4-206ENST00000600289 STARD4Q96DR4 205 aa14.48□□□□□ -0.09
LSM4-206ENST00000600289 GMPPAQ96IJ6 420 aaPredicted RBP14.48□□□□□ -0.09
LSM4-206ENST00000600289 GP6Q9HCN6 339 aa14.48□□□□□ -0.09
LSM4-206ENST00000600289 KCNN3Q9UGI6 736 aa14.48□□□□□ -0.09
LSM4-206ENST00000600289 ZNF232Q9UNY5 417 aa14.48□□□□□ -0.09
LSM4-206ENST00000600289 CHST2Q9Y4C5 530 aa14.48□□□□□ -0.09
LSM4-206ENST00000600289 MSTNO14793 375 aa14.47□□□□□ -0.09
LSM4-206ENST00000600289 SSTR2P30874 369 aa14.47□□□□□ -0.09
LSM4-206ENST00000600289 PRKAR1BP31321 381 aa14.47□□□□□ -0.09
LSM4-206ENST00000600289 RYKP34925 604 aa14.47□□□□□ -0.09
LSM4-206ENST00000600289 SLC1A3P43003 542 aa14.47□□□□□ -0.09
LSM4-206ENST00000600289 IDH2P48735 452 aaKnown RBP14.47□□□□□ -0.09
LSM4-206ENST00000600289 CARD18P57730 90 aa14.47□□□□□ -0.09
LSM4-206ENST00000600289 RAC3P60763 192 aa14.47□□□□□ -0.09
LSM4-206ENST00000600289 TMEM176BQ3YBM2 270 aaPredicted RBP14.47□□□□□ -0.09
LSM4-206ENST00000600289 SYT14P1Q58G82 188 aa14.47□□□□□ -0.09
LSM4-206ENST00000600289 ZNF311Q5JNZ3 666 aa14.47□□□□□ -0.09
LSM4-206ENST00000600289 FAM214BQ7L5A3 538 aa14.47□□□□□ -0.09
LSM4-206ENST00000600289 SERPINA11Q86U17 422 aa14.47□□□□□ -0.09
LSM4-206ENST00000600289 KRT73Q86Y46 540 aa14.47□□□□□ -0.09
LSM4-206ENST00000600289 NFKBIDQ8NI38 313 aa14.47□□□□□ -0.09
LSM4-206ENST00000600289 SPATA5L1Q9BVQ7 753 aa14.47□□□□□ -0.09
LSM4-206ENST00000600289 KAT8Q9H7Z6 458 aaKnown RBP14.47□□□□□ -0.09
LSM4-206ENST00000600289 CTPS2Q9NRF8 586 aa14.47□□□□□ -0.09
LSM4-206ENST00000600289 RLIMQ9NVW2 624 aa14.47□□□□□ -0.09
LSM4-206ENST00000600289 CHRNA9Q9UGM1 479 aa14.47□□□□□ -0.09
LSM4-206ENST00000600289 CAPN7Q9Y6W3 813 aa14.47□□□□□ -0.09
LSM4-206ENST00000600289 ACANP16112 2415 aa14.47□□□□□ -0.09
LSM4-206ENST00000600289 A8MXE2 369 aa14.46□□□□□ -0.09
LSM4-206ENST00000600289 EEF1E1-BLOC1S5C9J1V9 151 aa14.46□□□□□ -0.09
LSM4-206ENST00000600289 FXYD1O00168 92 aa14.46□□□□□ -0.09
LSM4-206ENST00000600289 EEF1E1O43324 174 aaKnown RBP14.46□□□□□ -0.09
LSM4-206ENST00000600289 ZNF208O43345 1280 aa14.46□□□□□ -0.09
LSM4-206ENST00000600289 DNPH1O43598 174 aa14.46□□□□□ -0.09
LSM4-206ENST00000600289 CGAP01215 116 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms