RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 PCNX3Q9H6A9 2034 aa13.49□□□□□ -0.25
UPF1-202ENST00000594243 AP3D1O14617 1153 aa13.49□□□□□ -0.25
UPF1-202ENST00000594243 CXCL13O43927 109 aa13.49□□□□□ -0.25
UPF1-202ENST00000594243 GKN3PP0CG01 181 aa13.49□□□□□ -0.25
UPF1-202ENST00000594243 SLC7A1P30825 629 aa13.49□□□□□ -0.25
UPF1-202ENST00000594243 PRKAR1BP31321 381 aa13.49□□□□□ -0.25
UPF1-202ENST00000594243 SLC1A3P43003 542 aa13.49□□□□□ -0.25
UPF1-202ENST00000594243 MAP2K6P52564 334 aa13.49□□□□□ -0.25
UPF1-202ENST00000594243 COPZ1P61923 177 aa13.49□□□□□ -0.25
UPF1-202ENST00000594243 GTF2IRD2BQ6EKJ0 949 aa13.49□□□□□ -0.25
UPF1-202ENST00000594243 PPP4R4Q6NUP7 873 aa13.49□□□□□ -0.25
UPF1-202ENST00000594243 POMZP3Q6PJE2 187 aa13.49□□□□□ -0.25
UPF1-202ENST00000594243 PLXDC2Q6UX71 529 aa13.49□□□□□ -0.25
UPF1-202ENST00000594243 NET1Q7Z628 596 aaPredicted RBP13.49□□□□□ -0.25
UPF1-202ENST00000594243 PIGWQ7Z7B1 504 aa13.49□□□□□ -0.25
UPF1-202ENST00000594243 GTF2IRD2Q86UP8 949 aa13.49□□□□□ -0.25
UPF1-202ENST00000594243 PTOV1Q86YD1 416 aa13.49□□□□□ -0.25
UPF1-202ENST00000594243 CLIP4Q8N3C7 705 aa13.49□□□□□ -0.25
UPF1-202ENST00000594243 FNDC9Q8TBE3 224 aa13.49□□□□□ -0.25
UPF1-202ENST00000594243 CPNE4Q96A23 557 aaPredicted RBP13.49□□□□□ -0.25
UPF1-202ENST00000594243 CMTM5Q96DZ9 223 aa13.49□□□□□ -0.25
UPF1-202ENST00000594243 REXO5Q96IC2 774 aaKnown RBP13.49□□□□□ -0.25
UPF1-202ENST00000594243 MYLK2Q9H1R3 596 aa13.49□□□□□ -0.25
UPF1-202ENST00000594243 EVA1AQ9H8M9 152 aa13.49□□□□□ -0.25
UPF1-202ENST00000594243 RNF122Q9H9V4 155 aa13.49□□□□□ -0.25
UPF1-202ENST00000594243 EFCAB1Q9HAE3 211 aa13.49□□□□□ -0.25
UPF1-202ENST00000594243 CTPS2Q9NRF8 586 aa13.49□□□□□ -0.25
UPF1-202ENST00000594243 TEX15Q9BXT5 2789 aa13.49□□□□□ -0.25
UPF1-202ENST00000594243 ADAM11O75078 769 aa13.48□□□□□ -0.25
UPF1-202ENST00000594243 SHC1P29353 583 aa13.48□□□□□ -0.25
UPF1-202ENST00000594243 ACAA2P42765 397 aaKnown RBP13.48□□□□□ -0.25
UPF1-202ENST00000594243 CLK1P49759 484 aaKnown RBP13.48□□□□□ -0.25
UPF1-202ENST00000594243 POLR2HP52434 150 aaKnown RBP13.48□□□□□ -0.25
UPF1-202ENST00000594243 TFF3Q07654 80 aa13.48□□□□□ -0.25
UPF1-202ENST00000594243 FOXF2Q12947 444 aa13.48□□□□□ -0.25
UPF1-202ENST00000594243 INTS11Q5TA45 600 aaKnown RBP13.48□□□□□ -0.25
UPF1-202ENST00000594243 WBP2NLQ6ICG8 309 aa13.48□□□□□ -0.25
UPF1-202ENST00000594243 DHRS4L2Q6PKH6 230 aa13.48□□□□□ -0.25
UPF1-202ENST00000594243 ADGRG3Q86Y34 549 aa13.48□□□□□ -0.25
UPF1-202ENST00000594243 ARMC8Q8IUR7 673 aa13.48□□□□□ -0.25
UPF1-202ENST00000594243 GCNT2Q8N0V5 402 aa13.48□□□□□ -0.25
UPF1-202ENST00000594243 POU5F2Q8N7G0 328 aa13.48□□□□□ -0.25
UPF1-202ENST00000594243 RCN3Q96D15 328 aa13.48□□□□□ -0.25
UPF1-202ENST00000594243 SLC39A3Q9BRY0 314 aa13.48□□□□□ -0.25
UPF1-202ENST00000594243 PIGMQ9H3S5 423 aa13.48□□□□□ -0.25
UPF1-202ENST00000594243 GLRX2Q9NS18 164 aa13.48□□□□□ -0.25
UPF1-202ENST00000594243 KLHL28Q9NXS3 571 aa13.48□□□□□ -0.25
UPF1-202ENST00000594243 CHRNA9Q9UGM1 479 aa13.48□□□□□ -0.25
UPF1-202ENST00000594243 FOXD3Q9UJU5 478 aaPredicted RBP13.48□□□□□ -0.25
UPF1-202ENST00000594243 SLC13A4Q9UKG4 626 aa13.48□□□□□ -0.25
UPF1-202ENST00000594243 AP3M1Q9Y2T2 418 aa13.48□□□□□ -0.25
UPF1-202ENST00000594243 ARL2BPQ9Y2Y0 163 aa13.48□□□□□ -0.25
UPF1-202ENST00000594243 CHST2Q9Y4C5 530 aa13.48□□□□□ -0.25
UPF1-202ENST00000594243 ARHGAP21Q5T5U3 1957 aa13.48□□□□□ -0.25
UPF1-202ENST00000594243 C19orf84I3L1E1 186 aa13.47□□□□□ -0.25
UPF1-202ENST00000594243 FXYD1O00168 92 aa13.47□□□□□ -0.25
UPF1-202ENST00000594243 SYT5O00445 386 aa13.47□□□□□ -0.25
UPF1-202ENST00000594243 AIM2O14862 343 aa13.47□□□□□ -0.25
UPF1-202ENST00000594243 HNRNPRO43390 633 aaKnown RBP13.47□□□□□ -0.25
UPF1-202ENST00000594243 MFN2O95140 757 aa13.47□□□□□ -0.25
UPF1-202ENST00000594243 COX6B1P14854 86 aa13.47□□□□□ -0.25
UPF1-202ENST00000594243 TACR3P29371 465 aa13.47□□□□□ -0.25
UPF1-202ENST00000594243 AQP1P29972 269 aa13.47□□□□□ -0.25
UPF1-202ENST00000594243 PRDX6P30041 224 aa13.47□□□□□ -0.25
UPF1-202ENST00000594243 ASCL1P50553 236 aa13.47□□□□□ -0.25
UPF1-202ENST00000594243 GZMMP51124 257 aa13.47□□□□□ -0.25
UPF1-202ENST00000594243 AGFG1P52594 562 aaKnown RBP13.47□□□□□ -0.25
UPF1-202ENST00000594243 PCBP3P57721 371 aaKnown RBP13.47□□□□□ -0.25
UPF1-202ENST00000594243 RAC3P60763 192 aa13.47□□□□□ -0.25
UPF1-202ENST00000594243 CSNK2A1P68400 391 aaPredicted RBP13.47□□□□□ -0.25
UPF1-202ENST00000594243 VMACQ2NL98 169 aa13.47□□□□□ -0.25
UPF1-202ENST00000594243 SYT14P1Q58G82 188 aa13.47□□□□□ -0.25
UPF1-202ENST00000594243 RABL3Q5HYI8 236 aa13.47□□□□□ -0.25
UPF1-202ENST00000594243 HIST2H2BCQ6DN03 193 aa13.47□□□□□ -0.25
UPF1-202ENST00000594243 ERICH5Q6P6B1 374 aa13.47□□□□□ -0.25
UPF1-202ENST00000594243 PATL1Q86TB9 770 aaKnown RBP13.47□□□□□ -0.25
UPF1-202ENST00000594243 ZZZ3Q8IYH5 903 aa13.47□□□□□ -0.25
UPF1-202ENST00000594243 RELL2Q8NC24 303 aaPredicted RBP13.47□□□□□ -0.25
UPF1-202ENST00000594243 DDIT4LQ96D03 193 aa13.47□□□□□ -0.25
UPF1-202ENST00000594243 OR5B2Q96R09 309 aa13.47□□□□□ -0.25
UPF1-202ENST00000594243 HOPXQ9BPY8 73 aaPredicted RBP13.47□□□□□ -0.25
UPF1-202ENST00000594243 SPOCK3Q9BQ16 436 aa13.47□□□□□ -0.25
UPF1-202ENST00000594243 ADAM19Q9H013 955 aa13.47□□□□□ -0.25
UPF1-202ENST00000594243 ENKD1Q9H0I2 346 aa13.47□□□□□ -0.25
UPF1-202ENST00000594243 PIF1Q9H611 641 aa13.47□□□□□ -0.25
UPF1-202ENST00000594243 FAM53CQ9NYF3 392 aa13.47□□□□□ -0.25
UPF1-202ENST00000594243 UNC79Q9P2D8 2635 aa13.47□□□□□ -0.25
UPF1-202ENST00000594243 NOTCH2Q04721 2471 aa13.46□□□□□ -0.25
UPF1-202ENST00000594243 TMED7-TICAM2A0A0A6YYA0 188 aa13.46□□□□□ -0.25
UPF1-202ENST00000594243 A0A1W2PNR3 127 aa13.46□□□□□ -0.25
UPF1-202ENST00000594243 A0A1W2PNV4 684 aa13.46□□□□□ -0.25
UPF1-202ENST00000594243 M0QX08 132 aa13.46□□□□□ -0.25
UPF1-202ENST00000594243 ZNF208O43345 1280 aa13.46□□□□□ -0.25
UPF1-202ENST00000594243 AQP8O94778 261 aa13.46□□□□□ -0.25
UPF1-202ENST00000594243 PLGP00747 810 aaPredicted RBP13.46□□□□□ -0.25
UPF1-202ENST00000594243 TFPIP10646 304 aa13.46□□□□□ -0.25
UPF1-202ENST00000594243 CXCR1P25024 350 aa13.46□□□□□ -0.25
UPF1-202ENST00000594243 PCGF2P35227 344 aa13.46□□□□□ -0.25
UPF1-202ENST00000594243 PEX19P40855 299 aa13.46□□□□□ -0.25
UPF1-202ENST00000594243 RNPS1Q15287 305 aaKnown RBP13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms