RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 ZSCAN5AQ9BUG6 496 aa3.84□□□□□ -1.79
LIG3-211ENST00000588713 CNPPD1Q9BV87 410 aa3.84□□□□□ -1.79
LIG3-211ENST00000588713 CINPQ9BW66 212 aaPredicted RBP3.84□□□□□ -1.79
LIG3-211ENST00000588713 HDHD5Q9BXW7 423 aa3.84□□□□□ -1.79
LIG3-211ENST00000588713 BEX2Q9BXY8 128 aa3.84□□□□□ -1.79
LIG3-211ENST00000588713 PRRG3Q9BZD7 231 aa3.84□□□□□ -1.79
LIG3-211ENST00000588713 GSX2Q9BZM3 304 aa3.84□□□□□ -1.79
LIG3-211ENST00000588713 TMEM168Q9H0V1 697 aa3.84□□□□□ -1.79
LIG3-211ENST00000588713 ABCB9Q9NP78 766 aa3.84□□□□□ -1.79
LIG3-211ENST00000588713 ZC4H2Q9NQZ6 224 aa3.84□□□□□ -1.79
LIG3-211ENST00000588713 YAE1D1Q9NRH1 226 aa3.84□□□□□ -1.79
LIG3-211ENST00000588713 SNTG1Q9NSN8 517 aa3.84□□□□□ -1.79
LIG3-211ENST00000588713 TXNL4BQ9NX01 149 aaKnown RBP3.84□□□□□ -1.79
LIG3-211ENST00000588713 MS4A12Q9NXJ0 267 aa3.84□□□□□ -1.79
LIG3-211ENST00000588713 SIDT1Q9NXL6 827 aaKnown RBP3.84□□□□□ -1.79
LIG3-211ENST00000588713 GPRC5BQ9NZH0 403 aa3.84□□□□□ -1.79
LIG3-211ENST00000588713 COQ3Q9NZJ6 369 aa3.84□□□□□ -1.79
LIG3-211ENST00000588713 NDUFAF4Q9P032 175 aa3.84□□□□□ -1.79
LIG3-211ENST00000588713 KLHL42Q9P2K6 505 aa3.84□□□□□ -1.79
LIG3-211ENST00000588713 RABL2AQ9UBK7 228 aaPredicted RBP3.84□□□□□ -1.79
LIG3-211ENST00000588713 ZNF282Q9UDV7 671 aaPredicted RBP3.84□□□□□ -1.79
LIG3-211ENST00000588713 ATP6V1HQ9UI12 483 aa3.84□□□□□ -1.79
LIG3-211ENST00000588713 GLS2Q9UI32 602 aa3.84□□□□□ -1.79
LIG3-211ENST00000588713 ATPIF1Q9UII2 106 aa3.84□□□□□ -1.79
LIG3-211ENST00000588713 DIMT1Q9UNQ2 313 aaKnown RBP3.84□□□□□ -1.79
LIG3-211ENST00000588713 DLGAP4Q9Y2H0 992 aa3.84□□□□□ -1.79
LIG3-211ENST00000588713 RPL36Q9Y3U8 105 aaKnown RBP3.84□□□□□ -1.79
LIG3-211ENST00000588713 OR1A2Q9Y585 309 aa3.84□□□□□ -1.79
LIG3-211ENST00000588713 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.84□□□□□ -1.79
LIG3-211ENST00000588713 PRKDCP78527 4128 aaKnown RBP3.83□□□□□ -1.8
LIG3-211ENST00000588713 MGAM2Q2M2H8 2515 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 GLYATL1P3A0A0U1RQE8 302 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 A0A1W2PRG6 482 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 KRBOX1C9JBD0 128 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 ATP6V1G2-DDX39BF2Z307 99 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 INMT-MINDY4F8WBC2 141 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 FAAHO00519 579 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 TOR1AO14656 332 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 FFAR3O14843 346 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 SCAMP2O15127 329 aaKnown RBP3.83□□□□□ -1.8
LIG3-211ENST00000588713 GPR42O15529 346 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 AKR7A2O43488 359 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 UGDHO60701 494 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 TNFRSF21O75509 655 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 CDRT1O95170 752 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 TIAF1O95411 115 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 TGM6O95932 706 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 MOCS2O96007 188 aaPredicted RBP3.83□□□□□ -1.8
LIG3-211ENST00000588713 DHFRP00374 187 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 PRLP01236 227 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 IFNA14P01570 189 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 IGLV3-27P01718 113 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 PRNPP04156 253 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 HOXD4P09016 255 aaPredicted RBP3.83□□□□□ -1.8
LIG3-211ENST00000588713 PRSS56P0CW18 603 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 PEPDP12955 493 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 OSMP13725 252 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 ZNF7P17097 686 aaPredicted RBP3.83□□□□□ -1.8
LIG3-211ENST00000588713 AMD1P17707 334 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 RHCEP18577 417 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 DDCP20711 480 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 MST1P26927 711 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 EVI2BP34910 448 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 RPL3P39023 403 aaKnown RBP3.83□□□□□ -1.8
LIG3-211ENST00000588713 XCR1P46094 333 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 ASMTP46597 345 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 INPP1P49441 399 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 HMGA2P52926 109 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 CRYBA2P53672 197 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 CRISP1P54107 249 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 PNLIPRP1P54315 467 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 CDH12P55289 794 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 WNT3P56703 355 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 WNT4P56705 351 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 TBX4P57082 545 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 DSTNP60981 165 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 RAB14P61106 215 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 SNRPD2P62316 118 aaKnown RBP3.83□□□□□ -1.8
LIG3-211ENST00000588713 SELENOWP63302 87 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 ABATP80404 500 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 FLI1Q01543 452 aaPredicted RBP3.83□□□□□ -1.8
LIG3-211ENST00000588713 DHODHQ02127 395 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 ALDH6A1Q02252 535 aaKnown RBP3.83□□□□□ -1.8
LIG3-211ENST00000588713 TPBGQ13641 420 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 EXOSC2Q13868 293 aaKnown RBP3.83□□□□□ -1.8
LIG3-211ENST00000588713 IRF4Q15306 451 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 GRK1Q15835 563 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 EXOC3L2Q2M3D2 409 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 TMEM44Q2T9K0 475 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 MS4A13Q5J8X5 152 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 SLC25A30Q5SVS4 291 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 GCNT6Q5T4J0 391 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 ANXA8L1Q5VT79 327 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 GARNL3Q5VVW2 1013 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 B3GNTL1Q67FW5 361 aaPredicted RBP3.83□□□□□ -1.8
LIG3-211ENST00000588713 ZNF324BQ6AW86 544 aaPredicted RBP3.83□□□□□ -1.8
LIG3-211ENST00000588713 CNIH2Q6PI25 160 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 CD200R1LQ6Q8B3 271 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 KLHL17Q6TDP4 642 aa3.83□□□□□ -1.8
LIG3-211ENST00000588713 ARSKQ6UWY0 536 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms