RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 DBIP07108 87 aaKnown RBP11.04□□□□□ -0.64
SS18-225ENST00000585121 ZCCHC18P0CG32 403 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 CRYGSP22914 178 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 COX20Q5RI15 118 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 ANKRD34AQ69YU3 496 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 DNAJC14Q6Y2X3 702 aaPredicted RBP11.04□□□□□ -0.64
SS18-225ENST00000585121 ZNF550Q7Z398 422 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 GRINAQ7Z429 371 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 TUSC5Q8IXB3 177 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 ABHD3Q8WU67 409 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 WDR60Q8WVS4 1066 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 ZG16BQ96DA0 208 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 ZHX1-C8orf76Q96EF9 292 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 HDHD5Q9BXW7 423 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 SLC38A1Q9H2H9 487 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 RAD21L1Q9H4I0 556 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 PLEKHF2Q9H8W4 249 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 TPT1P8Q9HAU6 139 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 INTS9Q9NV88 658 aaKnown RBP11.04□□□□□ -0.64
SS18-225ENST00000585121 C6orf203Q9P0P8 240 aaPredicted RBP11.04□□□□□ -0.64
SS18-225ENST00000585121 KLHL13Q9P2N7 655 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 GPR52Q9Y2T5 361 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 CELSR1Q9NYQ6 3014 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 SULT2B1O00204 365 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 CHRM4P08173 479 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 MDH1P40925 334 aaKnown RBP11.04□□□□□ -0.64
SS18-225ENST00000585121 IDH2P48735 452 aaKnown RBP11.04□□□□□ -0.64
SS18-225ENST00000585121 CLK1P49759 484 aaKnown RBP11.04□□□□□ -0.64
SS18-225ENST00000585121 CRISP3P54108 245 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 GYS2P54840 703 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 DSTNP60981 165 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 RASGEF1BQ0VAM2 473 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 SYT14P1Q58G82 188 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 TMPPEQ6ZT21 453 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 HMGN2P46Q86SG4 172 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 ZNF440Q8IYI8 595 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 STEAP2Q8NFT2 490 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 CNOT9Q92600 299 aaKnown RBP11.04□□□□□ -0.64
SS18-225ENST00000585121 VPS33AQ96AX1 596 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 MBD6Q96DN6 1003 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 PIK3IP1Q96FE7 263 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 ALPK1Q96QP1 1244 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 CCDC28BQ9BUN5 200 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 OR10A4Q9H209 315 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 ARMC7Q9H6L4 198 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 CTPS2Q9NRF8 586 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 CHRNA9Q9UGM1 479 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 PRDM4Q9UKN5 801 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 ZNF232Q9UNY5 417 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 HIVEP1P15822 2718 aa11.04□□□□□ -0.64
SS18-225ENST00000585121 IGHV3-15A0A0B4J1V0 119 aa11.03□□□□□ -0.64
SS18-225ENST00000585121 CFAP73A6NFT4 308 aa11.03□□□□□ -0.64
SS18-225ENST00000585121 CLDN24A6NM45 220 aa11.03□□□□□ -0.64
SS18-225ENST00000585121 C1QCP02747 245 aa11.03□□□□□ -0.64
SS18-225ENST00000585121 ETFAP13804 333 aa11.03□□□□□ -0.64
SS18-225ENST00000585121 CCKARP32238 428 aa11.03□□□□□ -0.64
SS18-225ENST00000585121 DIO1P49895 249 aa11.03□□□□□ -0.64
SS18-225ENST00000585121 IDH3AP50213 366 aa11.03□□□□□ -0.64
SS18-225ENST00000585121 AQP5P55064 265 aa11.03□□□□□ -0.64
SS18-225ENST00000585121 IRX1P78414 480 aaPredicted RBP11.03□□□□□ -0.64
SS18-225ENST00000585121 GABPB1Q06547 395 aaPredicted RBP11.03□□□□□ -0.64
SS18-225ENST00000585121 LARS2Q15031 903 aaKnown RBP11.03□□□□□ -0.64
SS18-225ENST00000585121 ZSWIM7Q19AV6 140 aa11.03□□□□□ -0.64
SS18-225ENST00000585121 LIN52Q52LA3 116 aa11.03□□□□□ -0.64
SS18-225ENST00000585121 STAC2Q6ZMT1 411 aa11.03□□□□□ -0.64
SS18-225ENST00000585121 NUFIP2Q7Z417 695 aaKnown RBP11.03□□□□□ -0.64
SS18-225ENST00000585121 OR9I1Q8NGQ6 314 aa11.03□□□□□ -0.64
SS18-225ENST00000585121 ZNF524Q96C55 264 aa11.03□□□□□ -0.64
SS18-225ENST00000585121 CCDC106Q9BWC9 280 aa11.03□□□□□ -0.64
SS18-225ENST00000585121 CXXC4Q9H2H0 198 aa11.03□□□□□ -0.64
SS18-225ENST00000585121 SLCO1B3Q9NPD5 702 aa11.03□□□□□ -0.64
SS18-225ENST00000585121 HDGFL3Q9Y3E1 203 aa11.03□□□□□ -0.64
SS18-225ENST00000585121 CYTIPO60759 359 aa11.02□□□□□ -0.65
SS18-225ENST00000585121 ATE1O95260 518 aa11.02□□□□□ -0.65
SS18-225ENST00000585121 BCHEP06276 602 aa11.02□□□□□ -0.65
SS18-225ENST00000585121 NID1P14543 1247 aa11.02□□□□□ -0.65
SS18-225ENST00000585121 PSMB1P20618 241 aaKnown RBP11.02□□□□□ -0.65
SS18-225ENST00000585121 IL32P24001 234 aa11.02□□□□□ -0.65
SS18-225ENST00000585121 SLC1A3P43003 542 aa11.02□□□□□ -0.65
SS18-225ENST00000585121 MRPL19P49406 292 aaKnown RBP11.02□□□□□ -0.65
SS18-225ENST00000585121 POLR2HP52434 150 aaKnown RBP11.02□□□□□ -0.65
SS18-225ENST00000585121 COPZ1P61923 177 aa11.02□□□□□ -0.65
SS18-225ENST00000585121 DEFB113Q30KQ7 82 aa11.02□□□□□ -0.65
SS18-225ENST00000585121 BEX5Q5H9J7 111 aa11.02□□□□□ -0.65
SS18-225ENST00000585121 MRPL2Q5T653 305 aaKnown RBP11.02□□□□□ -0.65
SS18-225ENST00000585121 MTDHQ86UE4 582 aaKnown RBP11.02□□□□□ -0.65
SS18-225ENST00000585121 OR52P1PQ8NH57 321 aa11.02□□□□□ -0.65
SS18-225ENST00000585121 GTF2H4Q92759 462 aa11.02□□□□□ -0.65
SS18-225ENST00000585121 DDIT4LQ96D03 193 aa11.02□□□□□ -0.65
SS18-225ENST00000585121 USB1Q9BQ65 265 aaKnown RBP11.02□□□□□ -0.65
SS18-225ENST00000585121 ACTR6Q9GZN1 396 aa11.02□□□□□ -0.65
SS18-225ENST00000585121 BCO1Q9HAY6 547 aa11.02□□□□□ -0.65
SS18-225ENST00000585121 SLC6A13Q9NSD5 602 aa11.02□□□□□ -0.65
SS18-225ENST00000585121 EMC3Q9P0I2 261 aa11.02□□□□□ -0.65
SS18-225ENST00000585121 MAP1AP78559 2803 aaPredicted RBP11.01□□□□□ -0.65
SS18-225ENST00000585121 A0A096LPI6 279 aa11.01□□□□□ -0.65
SS18-225ENST00000585121 TMED7-TICAM2A0A0A6YYA0 188 aa11.01□□□□□ -0.65
SS18-225ENST00000585121 A0A0G2JPF8 293 aa11.01□□□□□ -0.65
SS18-225ENST00000585121 ZNF724A8MTY0 619 aa11.01□□□□□ -0.65
SS18-225ENST00000585121 DEFB108AA8MXU0 73 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms