RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 C5orf34Q96MH7 638 aa13.89□□□□□ -0.19
SS18-215ENST00000580642 DSN1Q9H410 356 aa13.89□□□□□ -0.19
SS18-215ENST00000580642 CTPS2Q9NRF8 586 aa13.89□□□□□ -0.19
SS18-215ENST00000580642 PAPOLBQ9NRJ5 636 aaKnown RBP13.89□□□□□ -0.19
SS18-215ENST00000580642 KRT84Q9NSB2 600 aa13.89□□□□□ -0.19
SS18-215ENST00000580642 MED17Q9NVC6 651 aa13.89□□□□□ -0.19
SS18-215ENST00000580642 TMEFF2Q9UIK5 374 aaPredicted RBP13.89□□□□□ -0.19
SS18-215ENST00000580642 NTNG1Q9Y2I2 539 aa13.89□□□□□ -0.19
SS18-215ENST00000580642 SPIN1Q9Y657 262 aaPredicted RBP13.89□□□□□ -0.19
SS18-215ENST00000580642 A0A087WV48 116 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 A6NL46 340 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 KLRC4-KLRK1H3BQV0 150 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 ZNF208O43345 1280 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 NME2P1O60361 137 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 SP1P08047 785 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 ACADSP16219 412 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 ZNF17P17021 662 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 NME2P22392 152 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 PRKACGP22612 351 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 CXCR1P25024 350 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 MST1P26927 711 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 TACR3P29371 465 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 OMPP47874 163 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 CLK1P49759 484 aaKnown RBP13.88□□□□□ -0.19
SS18-215ENST00000580642 AQP4P55087 323 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 ESRRGP62508 458 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 ARG2P78540 354 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 ALDH6A1Q02252 535 aaKnown RBP13.88□□□□□ -0.19
SS18-215ENST00000580642 MERTKQ12866 999 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 PPP1R8Q12972 351 aaKnown RBP13.88□□□□□ -0.19
SS18-215ENST00000580642 TSPAN31Q12999 210 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 HYAL4Q2M3T9 481 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.88□□□□□ -0.19
SS18-215ENST00000580642 ANKDD1AQ495B1 522 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 CMPK2Q5EBM0 449 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 NHSL2Q5HYW2 709 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 PRAMEF20Q5VT98 475 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 TTC23Q5W5X9 447 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 BICRALQ6AI39 1079 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 PGBD2Q6P3X8 592 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 ZER1Q7Z7L7 766 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 HS3ST5Q8IZT8 346 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 CLDN22Q8N7P3 220 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 STK35Q8TDR2 534 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 SCMH1Q96GD3 660 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 BARD1Q99728 777 aaKnown RBP13.88□□□□□ -0.19
SS18-215ENST00000580642 GABARAPL3Q9BY60 117 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 UCK2Q9BZX2 261 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 SMURF2Q9HAU4 748 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 ZFP64Q9NPA5 681 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 SERINC1Q9NRX5 453 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 MED11Q9P086 117 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 B4GALT7Q9UBV7 327 aa13.88□□□□□ -0.19
SS18-215ENST00000580642 MAGED1Q9Y5V3 778 aaPredicted RBP13.88□□□□□ -0.19
SS18-215ENST00000580642 LINC01387J3KSC0 135 aa13.87□□□□□ -0.19
SS18-215ENST00000580642 SLC16A6O15403 523 aa13.87□□□□□ -0.19
SS18-215ENST00000580642 KLF4O43474 513 aa13.87□□□□□ -0.19
SS18-215ENST00000580642 GASTP01350 101 aa13.87□□□□□ -0.19
SS18-215ENST00000580642 ITGB2P05107 769 aa13.87□□□□□ -0.19
SS18-215ENST00000580642 ELK4P28324 431 aa13.87□□□□□ -0.19
SS18-215ENST00000580642 SRD5A2P31213 254 aa13.87□□□□□ -0.19
SS18-215ENST00000580642 GSSP48637 474 aa13.87□□□□□ -0.19
SS18-215ENST00000580642 TNFSF10P50591 281 aa13.87□□□□□ -0.19
SS18-215ENST00000580642 IL18R1Q13478 541 aa13.87□□□□□ -0.19
SS18-215ENST00000580642 PLPPR5Q32ZL2 321 aa13.87□□□□□ -0.19
SS18-215ENST00000580642 SPINK14Q6IE38 97 aa13.87□□□□□ -0.19
SS18-215ENST00000580642 RPL13AP3Q6NVV1 102 aa13.87□□□□□ -0.19
SS18-215ENST00000580642 BORAQ6PGQ7 559 aa13.87□□□□□ -0.19
SS18-215ENST00000580642 NRMQ8IXM6 262 aa13.87□□□□□ -0.19
SS18-215ENST00000580642 GTPBP8Q8N3Z3 284 aaPredicted RBP13.87□□□□□ -0.19
SS18-215ENST00000580642 DHRSXQ8N5I4 330 aa13.87□□□□□ -0.19
SS18-215ENST00000580642 OR9Q2Q8NGE9 314 aa13.87□□□□□ -0.19
SS18-215ENST00000580642 SLC25A43Q8WUT9 341 aaPredicted RBP13.87□□□□□ -0.19
SS18-215ENST00000580642 TMEM255BQ8WV15 326 aa13.87□□□□□ -0.19
SS18-215ENST00000580642 LIPHQ8WWY8 451 aa13.87□□□□□ -0.19
SS18-215ENST00000580642 TACO1Q9BSH4 297 aaKnown RBP13.87□□□□□ -0.19
SS18-215ENST00000580642 ANKRD10Q9NXR5 420 aa13.87□□□□□ -0.19
SS18-215ENST00000580642 QPCTLQ9NXS2 382 aa13.87□□□□□ -0.19
SS18-215ENST00000580642 OSGIN1Q9UJX0 560 aa13.87□□□□□ -0.19
SS18-215ENST00000580642 C15orf41Q9Y2V0 281 aa13.87□□□□□ -0.19
SS18-215ENST00000580642 NINQ8N4C6 2090 aa13.86□□□□□ -0.19
SS18-215ENST00000580642 SPTBN2O15020 2390 aa13.86□□□□□ -0.19
SS18-215ENST00000580642 TRAV17A0A0B4J275 112 aa13.86□□□□□ -0.19
SS18-215ENST00000580642 A8MVM7 634 aa13.86□□□□□ -0.19
SS18-215ENST00000580642 DLGAP1O14490 977 aa13.86□□□□□ -0.19
SS18-215ENST00000580642 OSMP13725 252 aa13.86□□□□□ -0.19
SS18-215ENST00000580642 SLC9A3P48764 834 aa13.86□□□□□ -0.19
SS18-215ENST00000580642 FOXO1Q12778 655 aa13.86□□□□□ -0.19
SS18-215ENST00000580642 TAF11Q15544 211 aa13.86□□□□□ -0.19
SS18-215ENST00000580642 TMEM44Q2T9K0 475 aa13.86□□□□□ -0.19
SS18-215ENST00000580642 OR5M10Q6IEU7 315 aa13.86□□□□□ -0.19
SS18-215ENST00000580642 WDR88Q6ZMY6 472 aa13.86□□□□□ -0.19
SS18-215ENST00000580642 RASSF6Q6ZTQ3 369 aa13.86□□□□□ -0.19
SS18-215ENST00000580642 OR2M7Q8NG81 312 aa13.86□□□□□ -0.19
SS18-215ENST00000580642 RNF217Q8TC41 542 aa13.86□□□□□ -0.19
SS18-215ENST00000580642 TFAP2CQ92754 450 aa13.86□□□□□ -0.19
SS18-215ENST00000580642 BPIFA2Q96DR5 249 aa13.86□□□□□ -0.19
SS18-215ENST00000580642 SIGLEC12Q96PQ1 595 aa13.86□□□□□ -0.19
SS18-215ENST00000580642 ADI1Q9BV57 179 aa13.86□□□□□ -0.19
SS18-215ENST00000580642 POTEKPQ9BYX7 375 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms