RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 TMEM45AQ9NWC5 275 aa21.34■■□□□ 1.01
SHMT1-206ENST00000579558 ZNF446Q9NWS9 450 aa21.34■■□□□ 1.01
SHMT1-206ENST00000579558 SPIN1Q9Y657 262 aaPredicted RBP21.34■■□□□ 1.01
SHMT1-206ENST00000579558 DSPPQ9NZW4 1301 aa21.33■■□□□ 1.01
SHMT1-206ENST00000579558 AP3D1O14617 1153 aa21.33■■□□□ 1.01
SHMT1-206ENST00000579558 ADAM11O75078 769 aa21.33■■□□□ 1.01
SHMT1-206ENST00000579558 NCF2P19878 526 aaPredicted RBP21.33■■□□□ 1.01
SHMT1-206ENST00000579558 IDH2P48735 452 aaKnown RBP21.33■■□□□ 1.01
SHMT1-206ENST00000579558 RAC3P60763 192 aa21.33■■□□□ 1.01
SHMT1-206ENST00000579558 LIN52Q52LA3 116 aa21.33■■□□□ 1.01
SHMT1-206ENST00000579558 SYT14P1Q58G82 188 aa21.33■■□□□ 1.01
SHMT1-206ENST00000579558 RPS26P11Q5JNZ5 115 aaPredicted RBP21.33■■□□□ 1.01
SHMT1-206ENST00000579558 LRIF1Q5T3J3 769 aa21.33■■□□□ 1.01
SHMT1-206ENST00000579558 OR52P1PQ8NH57 321 aa21.33■■□□□ 1.01
SHMT1-206ENST00000579558 RABEP2Q9H5N1 569 aa21.33■■□□□ 1.01
SHMT1-206ENST00000579558 SLC52A3Q9NQ40 469 aa21.33■■□□□ 1.01
SHMT1-206ENST00000579558 SLC25A37Q9NYZ2 338 aa21.33■■□□□ 1.01
SHMT1-206ENST00000579558 TESMINQ9Y4I5 508 aa21.33■■□□□ 1.01
SHMT1-206ENST00000579558 IGHV3-15A0A0B4J1V0 119 aa21.32■■□□□ 1
SHMT1-206ENST00000579558 C16orf97H3BN30 126 aa21.32■■□□□ 1
SHMT1-206ENST00000579558 CASKO14936 926 aa21.32■■□□□ 1
SHMT1-206ENST00000579558 GOSR1O95249 250 aa21.32■■□□□ 1
SHMT1-206ENST00000579558 TFPIP10646 304 aa21.32■■□□□ 1
SHMT1-206ENST00000579558 UGT2B10P36537 528 aa21.32■■□□□ 1
SHMT1-206ENST00000579558 FADDQ13158 208 aa21.32■■□□□ 1
SHMT1-206ENST00000579558 PAGE3Q5JUK9 113 aa21.32■■□□□ 1
SHMT1-206ENST00000579558 TMEM201Q5SNT2 666 aa21.32■■□□□ 1
SHMT1-206ENST00000579558 VRK2Q86Y07 508 aa21.32■■□□□ 1
SHMT1-206ENST00000579558 CDC20BQ86Y33 519 aa21.32■■□□□ 1
SHMT1-206ENST00000579558 SIKE1Q9BRV8 207 aa21.32■■□□□ 1
SHMT1-206ENST00000579558 C12orf49Q9H741 205 aa21.32■■□□□ 1
SHMT1-206ENST00000579558 CACYBPQ9HB71 228 aaKnown RBP21.32■■□□□ 1
SHMT1-206ENST00000579558 SLAMF8Q9P0V8 285 aa21.32■■□□□ 1
SHMT1-206ENST00000579558 CHRNA9Q9UGM1 479 aa21.32■■□□□ 1
SHMT1-206ENST00000579558 TRIM33Q9UPN9 1127 aa21.32■■□□□ 1
SHMT1-206ENST00000579558 A0A0G2JPF8 293 aa21.31■■□□□ 1
SHMT1-206ENST00000579558 HNRNPCL2B2RXH8 293 aa21.31■■□□□ 1
SHMT1-206ENST00000579558 HNRNPCL3B7ZW38 293 aa21.31■■□□□ 1
SHMT1-206ENST00000579558 HNRNPCL1O60812 293 aaKnown RBP21.31■■□□□ 1
SHMT1-206ENST00000579558 PRKD3O94806 890 aa21.31■■□□□ 1
SHMT1-206ENST00000579558 NUDT7P0C024 238 aa21.31■■□□□ 1
SHMT1-206ENST00000579558 HNRNPCL4P0DMR1 293 aa21.31■■□□□ 1
SHMT1-206ENST00000579558 ENPP1P22413 925 aa21.31■■□□□ 1
SHMT1-206ENST00000579558 CCKARP32238 428 aa21.31■■□□□ 1
SHMT1-206ENST00000579558 ZNF836Q6ZNA1 936 aa21.31■■□□□ 1
SHMT1-206ENST00000579558 STK32CQ86UX6 486 aa21.31■■□□□ 1
SHMT1-206ENST00000579558 MSRB3Q8IXL7 192 aa21.31■■□□□ 1
SHMT1-206ENST00000579558 ZNF440Q8IYI8 595 aa21.31■■□□□ 1
SHMT1-206ENST00000579558 SLC43A2Q8N370 569 aa21.31■■□□□ 1
SHMT1-206ENST00000579558 WFIKKN1Q96NZ8 548 aa21.31■■□□□ 1
SHMT1-206ENST00000579558 KLHL4Q9C0H6 718 aa21.31■■□□□ 1
SHMT1-206ENST00000579558 A4GALTQ9NPC4 353 aa21.31■■□□□ 1
SHMT1-206ENST00000579558 RLIMQ9NVW2 624 aa21.31■■□□□ 1
SHMT1-206ENST00000579558 KLHL28Q9NXS3 571 aa21.31■■□□□ 1
SHMT1-206ENST00000579558 KLHL13Q9P2N7 655 aa21.31■■□□□ 1
SHMT1-206ENST00000579558 ZNF443Q9Y2A4 671 aaPredicted RBP21.31■■□□□ 1
SHMT1-206ENST00000579558 OTOGQ6ZRI0 2925 aa21.3■■□□□ 1
SHMT1-206ENST00000579558 A0A0G2JND7 137 aa21.3■■□□□ 1
SHMT1-206ENST00000579558 CFAP73A6NFT4 308 aa21.3■■□□□ 1
SHMT1-206ENST00000579558 BMP2P12643 396 aa21.3■■□□□ 1
SHMT1-206ENST00000579558 UQCRBP14927 111 aa21.3■■□□□ 1
SHMT1-206ENST00000579558 CD1EP15812 388 aa21.3■■□□□ 1
SHMT1-206ENST00000579558 PPIBP23284 216 aaKnown RBP21.3■■□□□ 1
SHMT1-206ENST00000579558 HTR3AP46098 478 aa21.3■■□□□ 1
SHMT1-206ENST00000579558 DIO1P49895 249 aa21.3■■□□□ 1
SHMT1-206ENST00000579558 CSNK2A1P68400 391 aaPredicted RBP21.3■■□□□ 1
SHMT1-206ENST00000579558 EPS8Q12929 822 aa21.3■■□□□ 1
SHMT1-206ENST00000579558 LARS2Q15031 903 aaKnown RBP21.3■■□□□ 1
SHMT1-206ENST00000579558 TMPPEQ6ZT21 453 aa21.3■■□□□ 1
SHMT1-206ENST00000579558 TUSC5Q8IXB3 177 aa21.3■■□□□ 1
SHMT1-206ENST00000579558 MAL2Q969L2 176 aa21.3■■□□□ 1
SHMT1-206ENST00000579558 MED18Q9BUE0 208 aa21.3■■□□□ 1
SHMT1-206ENST00000579558 GP6Q9HCN6 339 aa21.3■■□□□ 1
SHMT1-206ENST00000579558 VAPAQ9P0L0 249 aa21.3■■□□□ 1
SHMT1-206ENST00000579558 SPG11Q96JI7 2443 aa21.3■■□□□ 1
SHMT1-206ENST00000579558 CCDC168Q8NDH2 2452 aa21.29■■□□□ 1
SHMT1-206ENST00000579558 A0A1W2PP18 115 aa21.29■■□□□ 1
SHMT1-206ENST00000579558 CDHR4A6H8M9 788 aa21.29■■□□□ 1
SHMT1-206ENST00000579558 SULT2B1O00204 365 aa21.29■■□□□ 1
SHMT1-206ENST00000579558 FAAHO00519 579 aa21.29■■□□□ 1
SHMT1-206ENST00000579558 SMAD9O15198 467 aaKnown RBP21.29■■□□□ 1
SHMT1-206ENST00000579558 THBS1P07996 1170 aa21.29■■□□□ 1
SHMT1-206ENST00000579558 CCNA2P20248 432 aa21.29■■□□□ 1
SHMT1-206ENST00000579558 DNAJA1P31689 397 aaKnown RBP21.29■■□□□ 1
SHMT1-206ENST00000579558 POLR2HP52434 150 aaKnown RBP21.29■■□□□ 1
SHMT1-206ENST00000579558 POU4F3Q15319 338 aa21.29■■□□□ 1
SHMT1-206ENST00000579558 BEND4Q6ZU67 534 aa21.29■■□□□ 1
SHMT1-206ENST00000579558 ZNF550Q7Z398 422 aa21.29■■□□□ 1
SHMT1-206ENST00000579558 ADGRG3Q86Y34 549 aa21.29■■□□□ 1
SHMT1-206ENST00000579558 TACO1Q9BSH4 297 aaKnown RBP21.29■■□□□ 1
SHMT1-206ENST00000579558 ZNF385DQ9H6B1 395 aa21.29■■□□□ 1
SHMT1-206ENST00000579558 FANCFQ9NPI8 374 aa21.29■■□□□ 1
SHMT1-206ENST00000579558 KLHL9Q9P2J3 617 aa21.29■■□□□ 1
SHMT1-206ENST00000579558 NIPSNAP3AQ9UFN0 247 aaPredicted RBP21.29■■□□□ 1
SHMT1-206ENST00000579558 ZNF232Q9UNY5 417 aa21.29■■□□□ 1
SHMT1-206ENST00000579558 TEP1Q99973 2627 aaKnown RBP21.28■■□□□ 1
SHMT1-206ENST00000579558 TMED7-TICAM2A0A0A6YYA0 188 aa21.28■■□□□ 1
SHMT1-206ENST00000579558 C5orf58C9J3I9 102 aa21.28■■□□□ 1
SHMT1-206ENST00000579558 HRGP04196 525 aa21.28■■□□□ 1
SHMT1-206ENST00000579558 FESP07332 822 aa21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms