RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 ANKFN1Q8N957 763 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 OR9I1Q8NGQ6 314 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 OR6K3Q8NGY3 331 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 ZFP90Q8TF47 636 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 WDR60Q8WVS4 1066 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 CKAP2Q8WWK9 683 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 PMM1Q92871 262 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 OSTF1Q92882 214 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 VPS33AQ96AX1 596 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 STARD4Q96DR4 205 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 ADGRG7Q96K78 797 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 DACH2Q96NX9 599 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 SIKE1Q9BRV8 207 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 POLDIP3Q9BY77 421 aaKnown RBP7.26□□□□□ -1.25
VPS53-214ENST00000572607 SAP130Q9H0E3 1048 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 CLEC4MQ9H2X3 399 aaPredicted RBP7.26□□□□□ -1.25
VPS53-214ENST00000572607 ARMC7Q9H6L4 198 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 TPT1P8Q9HAU6 139 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 ACER3Q9NUN7 267 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 ELOVL5Q9NYP7 299 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 ITGB1BP2Q9UKP3 347 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 TRIM33Q9UPN9 1127 aa7.26□□□□□ -1.25
VPS53-214ENST00000572607 ELOA3CA0A087WX78 387 aaPredicted RBP7.25□□□□□ -1.25
VPS53-214ENST00000572607 A0A0J9YW62 118 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 AGAP5A6NIR3 686 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 ELOA3DA6NLF2 546 aaPredicted RBP7.25□□□□□ -1.25
VPS53-214ENST00000572607 A6NNC1 897 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 C5orf58C9J3I9 102 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 SS18L1O75177 396 aaPredicted RBP7.25□□□□□ -1.25
VPS53-214ENST00000572607 AQP8O94778 261 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 CHRM4P08173 479 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 TFPIP10646 304 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 IL11P20809 199 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 PPIBP23284 216 aaKnown RBP7.25□□□□□ -1.25
VPS53-214ENST00000572607 FKBP2P26885 142 aaKnown RBP7.25□□□□□ -1.25
VPS53-214ENST00000572607 RYKP34925 604 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 PGM1P36871 562 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 CD79BP40259 229 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 APOBEC1P41238 236 aaKnown RBP7.25□□□□□ -1.25
VPS53-214ENST00000572607 KIR2DL2P43627 348 aaPredicted RBP7.25□□□□□ -1.25
VPS53-214ENST00000572607 HTR3AP46098 478 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 MRPL19P49406 292 aaKnown RBP7.25□□□□□ -1.25
VPS53-214ENST00000572607 ATP4BP51164 291 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 CSNK2A1P68400 391 aaPredicted RBP7.25□□□□□ -1.25
VPS53-214ENST00000572607 KCNJ10P78508 379 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 FUT5Q11128 374 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 TOMM34Q15785 309 aaPredicted RBP7.25□□□□□ -1.25
VPS53-214ENST00000572607 MAPK14Q16539 360 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 ZNF239Q16600 458 aaKnown RBP7.25□□□□□ -1.25
VPS53-214ENST00000572607 ZSWIM7Q19AV6 140 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 CTU2Q2VPK5 515 aaKnown RBP7.25□□□□□ -1.25
VPS53-214ENST00000572607 ELOA3BQ3SY89 546 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 LIN52Q52LA3 116 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 HSP90B2PQ58FF3 399 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 SLC25A53Q5H9E4 307 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 SLC2A7Q6PXP3 512 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 SPNS3Q6ZMD2 512 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 GRINAQ7Z429 371 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 BTLAQ7Z6A9 289 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 ELOA3Q8NG57 546 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 LINC01560Q8TB33 94 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 SLC25A43Q8WUT9 341 aaPredicted RBP7.25□□□□□ -1.25
VPS53-214ENST00000572607 SPDL1Q96EA4 605 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 ZHX1-C8orf76Q96EF9 292 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 OR5B2Q96R09 309 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 NPAS1Q99742 590 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 EBF4Q9BQW3 602 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 GPATCH1Q9BRR8 931 aaKnown RBP7.25□□□□□ -1.25
VPS53-214ENST00000572607 TACO1Q9BSH4 297 aaKnown RBP7.25□□□□□ -1.25
VPS53-214ENST00000572607 OPN3Q9H1Y3 402 aaPredicted RBP7.25□□□□□ -1.25
VPS53-214ENST00000572607 MTHFD2LQ9H903 347 aaPredicted RBP7.25□□□□□ -1.25
VPS53-214ENST00000572607 EXOSC3Q9NQT5 275 aaKnown RBP7.25□□□□□ -1.25
VPS53-214ENST00000572607 RASSF1Q9NS23 344 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 TMEM45AQ9NWC5 275 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 ZNF226Q9NYT6 803 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 CCDC167Q9P0B6 97 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 KCNE5Q9UJ90 142 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 CLEC4AQ9UMR7 237 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 ZNF232Q9UNY5 417 aa7.25□□□□□ -1.25
VPS53-214ENST00000572607 HCFC1P51610 2035 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 A0A096LPI6 279 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 CENPVL1A0A0U1RR11 272 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 SH3D21A4FU49 640 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 CFAP73A6NFT4 308 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 C16orf97H3BN30 126 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 CLIC1O00299 241 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 ETV2O00321 342 aaPredicted RBP7.24□□□□□ -1.25
VPS53-214ENST00000572607 CTAG2O75638 210 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 SASH3O75995 380 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 PRKD3O94806 890 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 NTN1O95631 604 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 BCHEP06276 602 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 ETFAP13804 333 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 NID1P14543 1247 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 NCF2P19878 526 aaPredicted RBP7.24□□□□□ -1.25
VPS53-214ENST00000572607 ENPP1P22413 925 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 PCYT1AP49585 367 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 SESN3P58005 492 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 COPZ1P61923 177 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 FADDQ13158 208 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms