RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 FNDC7Q5VTL7 733 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 RNLSQ5VYX0 342 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 FAAH2Q6GMR7 532 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 FAM198BQ6UWH4 519 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 LANCL3Q6ZV70 420 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 MRGPREQ86SM8 312 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 SLCO6A1Q86UG4 719 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 NKAIN4Q8IVV8 208 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 NRMQ8IXM6 262 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 ENTHD1Q8IYW4 607 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 NLGN4XQ8N0W4 816 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 ARMC10Q8N2F6 343 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 BPIFB6Q8NFQ5 453 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 NLGN4YQ8NFZ3 816 aaPredicted RBP7.3□□□□□ -1.24
VPS39-213ENST00000570062 ELOA3Q8NG57 546 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 OR6S1Q8NH40 331 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 B4GALNT2Q8NHY0 566 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 ZNF563Q8TA94 476 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 ZNF420Q8TAQ5 688 aaPredicted RBP7.3□□□□□ -1.24
VPS39-213ENST00000570062 LIPHQ8WWY8 451 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 ST8SIA1Q92185 356 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 EFHD2Q96C19 240 aaPredicted RBP7.3□□□□□ -1.24
VPS39-213ENST00000570062 SGCZQ96LD1 299 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 WDR77Q9BQA1 342 aaPredicted RBP7.3□□□□□ -1.24
VPS39-213ENST00000570062 BCL7BQ9BQE9 202 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 PRSS27Q9BQR3 290 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 RSPO3Q9BXY4 272 aaPredicted RBP7.3□□□□□ -1.24
VPS39-213ENST00000570062 SPRY4Q9C004 299 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 FN3KQ9H479 309 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 CPNE5Q9HCH3 593 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 CHCHD3Q9NX63 227 aaKnown RBP7.3□□□□□ -1.24
VPS39-213ENST00000570062 H2AFY2Q9P0M6 372 aaPredicted RBP7.3□□□□□ -1.24
VPS39-213ENST00000570062 PISDQ9UG56 409 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 TEKT2Q9UIF3 430 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 TCFL5Q9UL49 500 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP7.3□□□□□ -1.24
VPS39-213ENST00000570062 ICAM5Q9UMF0 924 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 SLC6A5Q9Y345 797 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 B3GALT1Q9Y5Z6 326 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 FASNP49327 2511 aaKnown RBP7.29□□□□□ -1.24
VPS39-213ENST00000570062 USP24Q9UPU5 2620 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 FAM186AA6NE01 2351 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 CLDN24A6NM45 220 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.29□□□□□ -1.24
VPS39-213ENST00000570062 STMND1H3BQB6 276 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 FRS3O43559 492 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 HCRTR2O43614 444 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 SLC25A12O75746 678 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 DKK1O94907 266 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 MT-ATP6P00846 226 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 HIST1H2ABP04908 130 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 SAGP10523 405 aaPredicted RBP7.29□□□□□ -1.24
VPS39-213ENST00000570062 APEHP13798 732 aaKnown RBP7.29□□□□□ -1.24
VPS39-213ENST00000570062 ZNF28P17035 718 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 ITIH1P19827 911 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 CXCR1P25024 350 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 ITPKBP27987 946 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 HTR2AP28223 471 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 RBMS1P29558 406 aaKnown RBP7.29□□□□□ -1.24
VPS39-213ENST00000570062 SLC6A6P31641 620 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 APOBEC1P41238 236 aaKnown RBP7.29□□□□□ -1.24
VPS39-213ENST00000570062 DLX5P56178 289 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 SLC35A2P78381 396 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 TCF15Q12870 199 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 SKP2Q13309 424 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 PCOLCEQ15113 449 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 NNATQ16517 81 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 SNAPC1Q16533 368 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 NTRK2Q16620 822 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 BTBD16Q32M84 506 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 SLC30A6Q6NXT4 461 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 SMARCD3Q6STE5 483 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 IGF2-ASQ6U949 168 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 ZNF620Q6ZNG0 422 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 KCTD8Q6ZWB6 473 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 HIST3H2AQ7L7L0 130 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 OLIG3Q7RTU3 272 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 GRINAQ7Z429 371 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 ZAR1Q86SH2 424 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 OAFQ86UD1 273 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 CD163Q86VB7 1156 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 COMTD1Q86VU5 262 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 GID4Q8IVV7 300 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 CADM2Q8N3J6 435 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 STX19Q8N4C7 294 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 TMCO5AQ8N6Q1 288 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 ZNF321PQ8N8H1 164 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 POGLUT1Q8NBL1 392 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 STK35Q8TDR2 534 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 TMEM255BQ8WV15 326 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 RORBQ92753 470 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 HIST1H2ACQ93077 130 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 SGTBQ96EQ0 304 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 IMMP1LQ96LU5 166 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 WFDC6Q9BQY6 131 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 COPS4Q9BT78 406 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 TSSK6Q9BXA6 273 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 ADAM19Q9H013 955 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 PTGES2Q9H7Z7 377 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 ZBTB20Q9HC78 741 aaPredicted RBP7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms