RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 SLC2A4P14672 509 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 KCNE1P15382 129 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 ZNF44P15621 663 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 ZNF25P17030 456 aaPredicted RBP4.66□□□□□ -1.66
VPS35-205ENST00000563984 CD22P20273 847 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 ACHEP22303 614 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 ELAVL4P26378 380 aaKnown RBP4.66□□□□□ -1.66
VPS35-205ENST00000563984 MMP12P39900 470 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 MTNR1AP48039 350 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 MRPL19P49406 292 aaKnown RBP4.66□□□□□ -1.66
VPS35-205ENST00000563984 GLUD2P49448 558 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 UGT2B15P54855 530 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 ATP5J2P56134 94 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 KCNK10P57789 538 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 HERVK_113P63132 956 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 ADARB1P78563 741 aaKnown RBP4.66□□□□□ -1.66
VPS35-205ENST00000563984 ZFP36L1Q07352 338 aaKnown RBP4.66□□□□□ -1.66
VPS35-205ENST00000563984 MZT1Q08AG7 82 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 DMWDQ09019 674 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 ILKQ13418 452 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 PDE7AQ13946 482 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 PTGES3Q15185 160 aaKnown RBP4.66□□□□□ -1.66
VPS35-205ENST00000563984 P2RY14Q15391 338 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 TRAM1Q15629 374 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 EXT1Q16394 746 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 GPR33Q49SQ1 333 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 C14orf28Q4W4Y0 310 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 SBK1Q52WX2 424 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 FGD3Q5JSP0 725 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 SPOUT1Q5T280 376 aaKnown RBP4.66□□□□□ -1.66
VPS35-205ENST00000563984 UBE2UQ5VVX9 321 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 ADNP2Q6IQ32 1131 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 CCDC144NLQ6NUI1 221 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 ACSM6Q6P461 480 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 C11orf57Q6ZUT1 292 aaPredicted RBP4.66□□□□□ -1.66
VPS35-205ENST00000563984 IRF2BP2Q7Z5L9 587 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 TECPR1Q7Z6L1 1165 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 S100A7AQ86SG5 101 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 PIP4P1Q86T03 277 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 MRPL52Q86TS9 123 aaKnown RBP4.66□□□□□ -1.66
VPS35-205ENST00000563984 CALHM1Q8IU99 346 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 C10orf107Q8IVU9 208 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 UEVLDQ8IX04 471 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 NRMQ8IXM6 262 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 BOD1L2Q8IYS8 172 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 RDH10Q8IZV5 341 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 CADM2Q8N3J6 435 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 TMEM199Q8N511 208 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 LMNTD1Q8N9Z9 388 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 TMEM116Q8NCL8 245 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 PXT1Q8NFP0 134 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 OR52L2PQ8NGH6 319 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 COQ8AQ8NI60 647 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 SFT2D1Q8WV19 159 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 HMGB4Q8WW32 186 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 PPWD1Q96BP3 646 aaKnown RBP4.66□□□□□ -1.66
VPS35-205ENST00000563984 WDFY2Q96P53 400 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 TECTBQ96PL2 329 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 EBF4Q9BQW3 602 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 TMEM109Q9BVC6 243 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 TM2D2Q9BX73 214 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 STRADBQ9C0K7 418 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 RBM38Q9H0Z9 239 aaKnown RBP4.66□□□□□ -1.66
VPS35-205ENST00000563984 ANKRD19PQ9H560 264 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 ELOVL6Q9H5J4 265 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 TMEM231Q9H6L2 316 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 ESRP2Q9H6T0 727 aaKnown RBP4.66□□□□□ -1.66
VPS35-205ENST00000563984 NT5DC2Q9H857 520 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 ANKZF1Q9H8Y5 726 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 WDR76Q9H967 626 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 IL1RL2Q9HB29 575 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 RHOFQ9HBH0 211 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 EML4Q9HC35 981 aaKnown RBP4.66□□□□□ -1.66
VPS35-205ENST00000563984 SEMA4BQ9NPR2 832 aaPredicted RBP4.66□□□□□ -1.66
VPS35-205ENST00000563984 C1orf109Q9NX04 203 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 WSB2Q9NYS7 404 aaPredicted RBP4.66□□□□□ -1.66
VPS35-205ENST00000563984 PAK5Q9P286 719 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 COPZ2Q9P299 210 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 RNF14Q9UBS8 474 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 MRM2Q9UI43 246 aaKnown RBP4.66□□□□□ -1.66
VPS35-205ENST00000563984 KCNG2Q9UJ96 466 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 OR51B4Q9Y5P0 310 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 ARL5AQ9Y689 179 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 MAPKBP1O60336 1514 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 ZNFX1Q9P2E3 1918 aaKnown RBP4.66□□□□□ -1.66
VPS35-205ENST00000563984 MYH11P35749 1972 aa4.65□□□□□ -1.66
VPS35-205ENST00000563984 CCDC88BA6NC98 1476 aa4.65□□□□□ -1.66
VPS35-205ENST00000563984 A2MP01023 1474 aa4.65□□□□□ -1.66
VPS35-205ENST00000563984 ISPDA4D126 451 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 TBC1D3FA6NER0 549 aaPredicted RBP4.65□□□□□ -1.67
VPS35-205ENST00000563984 C5orf52A6NGY3 159 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 NKX6-3A6NJ46 265 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 SAGE2PA6NJ88 616 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 GJE1A6NN92 205 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 H3BNX3 289 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 I3L521 148 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 IMPA2O14732 288 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 RGS5O15539 181 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 KIAA0513O60268 411 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 SRPX2O60687 465 aaPredicted RBP4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms