RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 TRBC2A0A5B9 178 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 TXNL1O43396 289 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 IMPA1P29218 277 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 STARP49675 285 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 GPR143P51810 404 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 DOC2AQ14183 400 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 OR2B11Q5JQS5 317 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 SLC30A6Q6NXT4 461 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 CACUL1Q86Y37 369 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 TMIEQ8NEW7 156 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 GSDMCQ9BYG8 508 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 AUNIPQ9H7T9 357 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 SEBOXQ9HB31 216 aaPredicted RBP12.34□□□□□ -0.43
CLK3-206ENST00000562078 ISYNA1Q9NPH2 558 aa12.34□□□□□ -0.43
CLK3-206ENST00000562078 AKAP7Q9P0M2 348 aaPredicted RBP12.34□□□□□ -0.43
CLK3-206ENST00000562078 PLXND1Q9Y4D7 1925 aa12.33□□□□□ -0.43
CLK3-206ENST00000562078 A0A1W2PPC1 479 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 ARRDC5A6NEK1 342 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 SPI1P17947 270 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 PRPH2P23942 346 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 GPR1P46091 355 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 UBE2IP63279 158 aaKnown RBP12.33□□□□□ -0.44
CLK3-206ENST00000562078 ECH1Q13011 328 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 KLF9Q13886 244 aaPredicted RBP12.33□□□□□ -0.44
CLK3-206ENST00000562078 C21orf62-AS1Q17RA5 79 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 ZNF791Q3KP31 576 aaPredicted RBP12.33□□□□□ -0.44
CLK3-206ENST00000562078 ITPRIPL2Q3MIP1 535 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 CCDC157Q569K6 752 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 EOGTQ5NDL2 527 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 FAM27D1Q5T7N8 215 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 HACD4Q5VWC8 232 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 LIPJQ5W064 366 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 ADNP2Q6IQ32 1131 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 ACSM5Q6NUN0 579 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 MEIOBQ8N635 442 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 TRMT10AQ8TBZ6 339 aaKnown RBP12.33□□□□□ -0.44
CLK3-206ENST00000562078 NR4A3Q92570 626 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 GTF3AQ92664 365 aaKnown RBP12.33□□□□□ -0.44
CLK3-206ENST00000562078 OR1F2PQ96R84 312 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 MNTQ99583 582 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 TMEM121BQ9BXQ6 578 aaPredicted RBP12.33□□□□□ -0.44
CLK3-206ENST00000562078 SLC25A32Q9H2D1 315 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 FAM120CQ9NX05 1096 aaKnown RBP12.33□□□□□ -0.44
CLK3-206ENST00000562078 ZNF729A6NN14 1252 aaPredicted RBP12.33□□□□□ -0.44
CLK3-206ENST00000562078 NPC1O15118 1278 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 ACHEP22303 614 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 RGS19P49795 217 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 PGDP52209 483 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 ACTR1AP61163 376 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 MAT1AQ00266 395 aaKnown RBP12.33□□□□□ -0.44
CLK3-206ENST00000562078 TSTA3Q13630 321 aaPredicted RBP12.33□□□□□ -0.44
CLK3-206ENST00000562078 C18orf63Q68DL7 685 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 ZCCHC12Q6PEW1 402 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 STX12Q86Y82 276 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 CFAP206Q8IYR0 622 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 SPICQ8N5J4 248 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 SETD7Q8WTS6 366 aaKnown RBP12.33□□□□□ -0.44
CLK3-206ENST00000562078 PPP1R16AQ96I34 528 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 PFDN5Q99471 154 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 DUSP26Q9BV47 211 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 ZCCHC2Q9C0B9 1178 aaKnown RBP12.33□□□□□ -0.44
CLK3-206ENST00000562078 PRM3Q9NNZ6 103 aa12.33□□□□□ -0.44
CLK3-206ENST00000562078 LRIT2A6NDA9 550 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 C5orf52A6NGY3 159 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 UGDHO60701 494 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 LILRB5O75023 590 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 SH3BGRLO75368 114 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 OR2A4O95047 310 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 CD63P08962 238 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 ACP2P11117 423 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 SHC1P29353 583 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 DCDP81605 110 aaKnown RBP12.32□□□□□ -0.44
CLK3-206ENST00000562078 ZNF155Q12901 538 aaPredicted RBP12.32□□□□□ -0.44
CLK3-206ENST00000562078 PDZK1IP1Q13113 114 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 ZNF658BQ4V348 819 aaPredicted RBP12.32□□□□□ -0.44
CLK3-206ENST00000562078 IZUMO1Q8IYV9 350 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 SPAG16Q8N0X2 631 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 LMNTD1Q8N9Z9 388 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 OR8J2Q8NGG1 315 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 CSGALNACT1Q8TDX6 532 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 KAT2AQ92830 837 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 OR2A7Q96R45 310 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 POLDIP3Q9BY77 421 aaKnown RBP12.32□□□□□ -0.44
CLK3-206ENST00000562078 PTGFRNQ9P2B2 879 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 ATXN7L1Q9ULK2 861 aaPredicted RBP12.32□□□□□ -0.44
CLK3-206ENST00000562078 GOLGA4Q13439 2230 aaKnown RBP12.32□□□□□ -0.44
CLK3-206ENST00000562078 A0A1B0GTQ1 180 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 A0A1B0GUH1 482 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 TMEM218A2RU14 115 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 SLC9B1P1A6NJY1 282 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 KAT7O95251 611 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 IFNW1P05000 195 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 ANXA7P20073 488 aaKnown RBP12.32□□□□□ -0.44
CLK3-206ENST00000562078 SLC1A3P43003 542 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 EEF1A1P68104 462 aaKnown RBP12.32□□□□□ -0.44
CLK3-206ENST00000562078 EEF1A2Q05639 463 aaKnown RBP12.32□□□□□ -0.44
CLK3-206ENST00000562078 RAB40BQ12829 278 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 GINS1Q14691 196 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 EEF1A1P5Q5VTE0 462 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 SLC22A10Q63ZE4 541 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 510.2 ms