RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 UNC119BA6NIH7 251 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 SAGE2PA6NJ88 616 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 KDM4EB2RXH2 506 aaPredicted RBP4.99□□□□□ -1.61
VPS13C-209ENST00000560637 C9orf172C9J069 976 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 TBX1O43435 398 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 CXCL13O43927 109 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 PLOD3O60568 738 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 TNFAIP8O95379 198 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 FAM87AP0C7U9 286 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 CCL3P10147 92 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 LIFP15018 202 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 ZNF3P17036 446 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 F8A1P23610 371 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 CAPGP40121 348 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 SOX2P48431 317 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 GDI2P50395 445 aaKnown RBP4.99□□□□□ -1.61
VPS13C-209ENST00000560637 CHN2P52757 468 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 RPS3AP61247 264 aaKnown RBP4.99□□□□□ -1.61
VPS13C-209ENST00000560637 PPIAP62937 165 aaKnown RBP4.99□□□□□ -1.61
VPS13C-209ENST00000560637 PSG6Q00889 435 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 MC2RQ01718 297 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 C17orf67Q0P5P2 114 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 EBPQ15125 230 aaKnown RBP4.99□□□□□ -1.61
VPS13C-209ENST00000560637 ZNF528Q3MIS6 628 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 ALG10Q5BKT4 473 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 RNASE12Q5GAN4 147 aaKnown RBP4.99□□□□□ -1.61
VPS13C-209ENST00000560637 DMRTC1Q5HYR2 192 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 DCAF10Q5QP82 559 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 SLC27A4Q6P1M0 643 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 ARL9Q6T311 187 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 CCDC103Q8IW40 242 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 LRRC18Q8N456 261 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 CISD2Q8N5K1 135 aaKnown RBP4.99□□□□□ -1.61
VPS13C-209ENST00000560637 LRRC17Q8N6Y2 441 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 FAM181AQ8N9Y4 354 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 SMAP2Q8WU79 429 aaPredicted RBP4.99□□□□□ -1.61
VPS13C-209ENST00000560637 ROBO4Q8WZ75 1007 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 SPACA9Q96E40 222 aaPredicted RBP4.99□□□□□ -1.61
VPS13C-209ENST00000560637 ADAD1Q96M93 576 aaKnown RBP4.99□□□□□ -1.61
VPS13C-209ENST00000560637 NIPSNAP1Q9BPW8 284 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 DUSP22Q9NRW4 184 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 RAXQ9Y2V3 346 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 YARS2Q9Y2Z4 477 aaKnown RBP4.99□□□□□ -1.61
VPS13C-209ENST00000560637 TMED7Q9Y3B3 224 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 ADAM18Q9Y3Q7 739 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 PCDHGA6Q9Y5G7 932 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 CADP27708 2225 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 DNAH14Q0VDD8 3507 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 FOXD2O60548 495 aaPredicted RBP4.99□□□□□ -1.61
VPS13C-209ENST00000560637 TBX6O95947 436 aaPredicted RBP4.99□□□□□ -1.61
VPS13C-209ENST00000560637 GASTP01350 101 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 ERGP11308 486 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 NID1P14543 1247 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 PRKCAP17252 672 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 ALDH3A2P51648 485 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 SMSP52788 366 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 PCBP4P57723 403 aaKnown RBP4.99□□□□□ -1.61
VPS13C-209ENST00000560637 SLC3A1Q07837 685 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 MYBPC3Q14896 1274 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 PON3Q15166 354 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 CD226Q15762 336 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 ATP6AP1Q15904 470 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 ADPRMQ3LIE5 342 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 IQCCQ4KMZ1 466 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 LRIF1Q5T3J3 769 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 C1QL3Q5VWW1 255 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 MRM1Q6IN84 353 aaKnown RBP4.99□□□□□ -1.61
VPS13C-209ENST00000560637 VHLLQ6RSH7 139 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 CPOQ8IVL8 374 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 SVOPLQ8N434 492 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 SUMF1Q8NBK3 374 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 MOSPD2Q8NHP6 518 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 CHCHD6Q9BRQ6 235 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 KATNB1Q9BVA0 655 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 ZNF717Q9BY31 904 aaPredicted RBP4.99□□□□□ -1.61
VPS13C-209ENST00000560637 C6orf62Q9GZU0 229 aaPredicted RBP4.99□□□□□ -1.61
VPS13C-209ENST00000560637 HOXD1Q9GZZ0 328 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 SACM1LQ9NTJ5 587 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 GPATCH2Q9NW75 528 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 MED29Q9NX70 200 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 NDUFAF4Q9P032 175 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 POFUT2Q9Y2G5 429 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 SNRNP200O75643 2136 aaKnown RBP4.99□□□□□ -1.61
VPS13C-209ENST00000560637 CSPG4Q6UVK1 2322 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 A0A075B6Q4 140 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 IQCMA0A1B0GVH7 501 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 KLRC4-KLRK1H3BQV0 150 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 MFN2O95140 757 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 TFPTP0C1Z6 253 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 CD79AP11912 226 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 CEACAM1P13688 526 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 SLC6A6P31641 620 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 DCAF7P61962 342 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 RUNX1T1Q06455 604 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 FOXF1Q12946 379 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 NFATC3Q12968 1075 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 SSPNQ14714 243 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 ZNF628Q5EBL2 1059 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 PDSS1Q5T2R2 415 aa4.99□□□□□ -1.61
VPS13C-209ENST00000560637 PGM2L1Q6PCE3 622 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 132.7 ms