RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 NUDT15Q9NV35 164 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 YBX2Q9Y2T7 364 aaKnown RBP11.89□□□□□ -0.51
LDLR-207ENST00000558013 MED31Q9Y3C7 131 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 HSPB11Q9Y547 144 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 HEBP2Q9Y5Z4 205 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 FAM171A2A8MVW0 826 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 IDSB3KWA1 339 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 PTP4A3O75365 173 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 RDH16O75452 317 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 EGFP01133 1207 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 MT-ND5P03915 603 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 EN2P19622 333 aaPredicted RBP11.89□□□□□ -0.51
LDLR-207ENST00000558013 SLC6A1P30531 599 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 NTSR1P30989 418 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 CRYZQ08257 329 aaKnown RBP11.89□□□□□ -0.51
LDLR-207ENST00000558013 EIPR1Q53HC9 387 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 METAP1DQ6UB28 335 aaPredicted RBP11.89□□□□□ -0.51
LDLR-207ENST00000558013 SLC44A3Q8N4M1 653 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 OR52R1Q8NGF1 315 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 OR52E2Q8NGJ4 325 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 OR4C6Q8NH72 309 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 ZPLD1Q8TCW7 415 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 SNAPC3Q92966 411 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 PDCD1LG2Q9BQ51 273 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 GPR174Q9BXC1 333 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 BEX1Q9HBH7 125 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 MCCC2Q9HCC0 563 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 FAM60AQ9NP50 221 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 TRPV5Q9NQA5 729 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 ARID1BQ8NFD5 2236 aaPredicted RBP11.89□□□□□ -0.51
LDLR-207ENST00000558013 TDRD6O60522 2096 aaKnown RBP11.89□□□□□ -0.51
LDLR-207ENST00000558013 FAM86C2PA6NEL3 165 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 TSC22D2O75157 780 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 ADRB1P08588 477 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 POU2F2P09086 479 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 TYRP1P17643 537 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 GRPRP30550 384 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 FCN2Q15485 313 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 TMEM44Q2T9K0 475 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 CCDC58Q4VC31 144 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 TCTE3Q8IZS6 198 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 PHOSPHO2Q8TCD6 241 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 SIPA1Q96FS4 1042 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 CITED4Q96RK1 184 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 ZFYVE21Q9BQ24 234 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 TMEM106CQ9BVX2 250 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 RWDD3Q9Y3V2 267 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 VPS13AQ96RL7 3174 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 A6NCN8 305 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 PLPP2O43688 288 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 BRINP1O60477 761 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 ZNF780AO75290 641 aaPredicted RBP11.88□□□□□ -0.51
LDLR-207ENST00000558013 GPR75O95800 540 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 CBX7O95931 251 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 AGR2O95994 175 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 HIST1H1CP16403 213 aaKnown RBP11.88□□□□□ -0.51
LDLR-207ENST00000558013 ATF1P18846 271 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 SLC2A5P22732 501 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 PSMB10P40306 273 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 PITPNBP48739 271 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 DGCR2P98153 550 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 TMPRSS11FQ6ZWK6 438 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 CDRT4Q8N9R6 151 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 BEST4Q8NFU0 473 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 OR9A4Q8NGU2 314 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 ZFAND1Q8TCF1 268 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 RFT1Q96AA3 541 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 ERMAPQ96PL5 475 aaPredicted RBP11.88□□□□□ -0.51
LDLR-207ENST00000558013 JAM3Q9BX67 310 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 OBP2AQ9NY56 170 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 SLC35A3Q9Y2D2 325 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 HEATR5AQ86XA9 2040 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 RIIAD1A6NNX1 92 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 ORC5O43913 435 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 SLC19A2O60779 497 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 FZD7O75084 574 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 RCBTB2O95199 551 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 ATP1B1P05026 303 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 CCR6P51684 374 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 PSG6Q00889 435 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 RIN1Q13671 783 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 NFATC4Q14934 902 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 ALG11Q2TAA5 492 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 PLA1AQ53H76 456 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 KIAA1324Q6UXG2 1013 aaKnown RBP11.88□□□□□ -0.51
LDLR-207ENST00000558013 LRRC28Q86X40 367 aaPredicted RBP11.88□□□□□ -0.51
LDLR-207ENST00000558013 CDK20Q8IZL9 346 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 PHF21AQ96BD5 680 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 ANKRD9Q96BM1 317 aaPredicted RBP11.88□□□□□ -0.51
LDLR-207ENST00000558013 HRASLS2Q9NWW9 162 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 MRPL15Q9P015 296 aaKnown RBP11.88□□□□□ -0.51
LDLR-207ENST00000558013 AK6Q9Y3D8 172 aaKnown RBP11.88□□□□□ -0.51
LDLR-207ENST00000558013 FANCMQ8IYD8 2048 aa11.88□□□□□ -0.51
LDLR-207ENST00000558013 SEC16AO15027 2179 aa11.87□□□□□ -0.51
LDLR-207ENST00000558013 SLC22A31A6NKX4 558 aa11.87□□□□□ -0.51
LDLR-207ENST00000558013 FABP7O15540 132 aa11.87□□□□□ -0.51
LDLR-207ENST00000558013 NDUFB5O43674 189 aa11.87□□□□□ -0.51
LDLR-207ENST00000558013 SLC43A1O75387 559 aa11.87□□□□□ -0.51
LDLR-207ENST00000558013 ACAA2P42765 397 aaKnown RBP11.87□□□□□ -0.51
LDLR-207ENST00000558013 POU6F2P78424 691 aaPredicted RBP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms