RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 SPANXN4Q5MJ08 99 aa12.98□□□□□ -0.33
SHMT2-235ENST00000557740 NCMAPQ5T1S8 102 aa12.98□□□□□ -0.33
SHMT2-235ENST00000557740 TYW3Q6IPR3 259 aaKnown RBP12.98□□□□□ -0.33
SHMT2-235ENST00000557740 TMPPEQ6ZT21 453 aa12.98□□□□□ -0.33
SHMT2-235ENST00000557740 GALNT5Q7Z7M9 940 aa12.98□□□□□ -0.33
SHMT2-235ENST00000557740 ZNF100Q8IYN0 542 aa12.98□□□□□ -0.33
SHMT2-235ENST00000557740 LRRC34Q8IZ02 419 aa12.98□□□□□ -0.33
SHMT2-235ENST00000557740 FBXW5Q969U6 566 aa12.98□□□□□ -0.33
SHMT2-235ENST00000557740 ROPN1LQ96C74 230 aa12.98□□□□□ -0.33
SHMT2-235ENST00000557740 ZHX1-C8orf76Q96EF9 292 aa12.98□□□□□ -0.33
SHMT2-235ENST00000557740 NEURL3Q96EH8 262 aa12.98□□□□□ -0.33
SHMT2-235ENST00000557740 ZNF300Q96RE9 604 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-235ENST00000557740 SLC35A5Q9BS91 424 aa12.98□□□□□ -0.33
SHMT2-235ENST00000557740 KCNK9Q9NPC2 374 aa12.98□□□□□ -0.33
SHMT2-235ENST00000557740 ZNF701Q9NV72 531 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-235ENST00000557740 MARCOQ9UEW3 520 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-235ENST00000557740 CHRNA9Q9UGM1 479 aa12.98□□□□□ -0.33
SHMT2-235ENST00000557740 LAMP3Q9UQV4 416 aa12.98□□□□□ -0.33
SHMT2-235ENST00000557740 NUP214P35658 2090 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-235ENST00000557740 JMJD1CQ15652 2540 aa12.98□□□□□ -0.33
SHMT2-235ENST00000557740 RAI1Q7Z5J4 1906 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-235ENST00000557740 ZNF814B7Z6K7 855 aa12.97□□□□□ -0.33
SHMT2-235ENST00000557740 C9JVG2 144 aa12.97□□□□□ -0.33
SHMT2-235ENST00000557740 SCN2BO60939 215 aa12.97□□□□□ -0.33
SHMT2-235ENST00000557740 LYZL6O75951 148 aa12.97□□□□□ -0.33
SHMT2-235ENST00000557740 GUSBP08236 651 aa12.97□□□□□ -0.33
SHMT2-235ENST00000557740 PGM1P36871 562 aa12.97□□□□□ -0.33
SHMT2-235ENST00000557740 APOBEC1P41238 236 aaKnown RBP12.97□□□□□ -0.33
SHMT2-235ENST00000557740 ANXA11P50995 505 aaKnown RBP12.97□□□□□ -0.33
SHMT2-235ENST00000557740 PHC1P78364 1004 aa12.97□□□□□ -0.33
SHMT2-235ENST00000557740 FUT5Q11128 374 aa12.97□□□□□ -0.33
SHMT2-235ENST00000557740 CASP8Q14790 479 aa12.97□□□□□ -0.33
SHMT2-235ENST00000557740 MAPK14Q16539 360 aa12.97□□□□□ -0.33
SHMT2-235ENST00000557740 GPAT3Q53EU6 434 aa12.97□□□□□ -0.33
SHMT2-235ENST00000557740 CEP85LQ5SZL2 805 aa12.97□□□□□ -0.33
SHMT2-235ENST00000557740 ADAM5Q6NVV9 412 aa12.97□□□□□ -0.33
SHMT2-235ENST00000557740 FRRS1Q6ZNA5 592 aa12.97□□□□□ -0.33
SHMT2-235ENST00000557740 ARFGAP2Q8N6H7 521 aa12.97□□□□□ -0.33
SHMT2-235ENST00000557740 TRIML2Q8N7C3 387 aa12.97□□□□□ -0.33
SHMT2-235ENST00000557740 FAM71CQ8NEG0 241 aa12.97□□□□□ -0.33
SHMT2-235ENST00000557740 GTPBP3Q969Y2 492 aaKnown RBP12.97□□□□□ -0.33
SHMT2-235ENST00000557740 ZNF775Q96BV0 537 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-235ENST00000557740 MUCL1Q96DR8 90 aa12.97□□□□□ -0.33
SHMT2-235ENST00000557740 PAIP2Q9BPZ3 127 aaKnown RBP12.97□□□□□ -0.33
SHMT2-235ENST00000557740 C20orf27Q9GZN8 174 aa12.97□□□□□ -0.33
SHMT2-235ENST00000557740 MEAF6Q9HAF1 191 aa12.97□□□□□ -0.33
SHMT2-235ENST00000557740 PRSS50Q9UI38 385 aa12.97□□□□□ -0.33
SHMT2-235ENST00000557740 HAO1Q9UJM8 370 aa12.97□□□□□ -0.33
SHMT2-235ENST00000557740 ING1Q9UK53 422 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-235ENST00000557740 PRR14LQ5THK1 2151 aa12.96□□□□□ -0.33
SHMT2-235ENST00000557740 A0A1W2PP18 115 aa12.96□□□□□ -0.33
SHMT2-235ENST00000557740 NME5P56597 212 aa12.96□□□□□ -0.33
SHMT2-235ENST00000557740 BSPH1Q075Z2 132 aa12.96□□□□□ -0.33
SHMT2-235ENST00000557740 PPA1Q15181 289 aa12.96□□□□□ -0.33
SHMT2-235ENST00000557740 ABLIM2Q6H8Q1 611 aa12.96□□□□□ -0.33
SHMT2-235ENST00000557740 OGFOD2Q6N063 350 aa12.96□□□□□ -0.33
SHMT2-235ENST00000557740 SSX8Q7RTT4 187 aa12.96□□□□□ -0.33
SHMT2-235ENST00000557740 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.96□□□□□ -0.33
SHMT2-235ENST00000557740 GRINAQ7Z429 371 aa12.96□□□□□ -0.33
SHMT2-235ENST00000557740 HMGN2P46Q86SG4 172 aa12.96□□□□□ -0.33
SHMT2-235ENST00000557740 PIGXQ8TBF5 258 aa12.96□□□□□ -0.33
SHMT2-235ENST00000557740 PIWIL2Q8TC59 973 aaKnown RBP12.96□□□□□ -0.33
SHMT2-235ENST00000557740 CCDC115Q96NT0 180 aa12.96□□□□□ -0.33
SHMT2-235ENST00000557740 CCDC106Q9BWC9 280 aa12.96□□□□□ -0.33
SHMT2-235ENST00000557740 PARD6BQ9BYG5 372 aa12.96□□□□□ -0.33
SHMT2-235ENST00000557740 SAP130Q9H0E3 1048 aa12.96□□□□□ -0.33
SHMT2-235ENST00000557740 EXOSC3Q9NQT5 275 aaKnown RBP12.96□□□□□ -0.33
SHMT2-235ENST00000557740 CTPS2Q9NRF8 586 aa12.96□□□□□ -0.33
SHMT2-235ENST00000557740 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-235ENST00000557740 HMGN4O00479 90 aa12.95□□□□□ -0.34
SHMT2-235ENST00000557740 BCAS1O75363 584 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-235ENST00000557740 GGT1P19440 569 aa12.95□□□□□ -0.34
SHMT2-235ENST00000557740 PCSK6P29122 969 aa12.95□□□□□ -0.34
SHMT2-235ENST00000557740 KCNJ10P78508 379 aa12.95□□□□□ -0.34
SHMT2-235ENST00000557740 TXNL4AP83876 142 aaKnown RBP12.95□□□□□ -0.34
SHMT2-235ENST00000557740 PPP2R2BQ00005 443 aa12.95□□□□□ -0.34
SHMT2-235ENST00000557740 BST1Q10588 318 aa12.95□□□□□ -0.34
SHMT2-235ENST00000557740 ZNF672Q499Z4 452 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-235ENST00000557740 HHATQ5VTY9 493 aa12.95□□□□□ -0.34
SHMT2-235ENST00000557740 CROCCP2Q86T23 111 aa12.95□□□□□ -0.34
SHMT2-235ENST00000557740 ATG4DQ86TL0 474 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-235ENST00000557740 MTDHQ86UE4 582 aaKnown RBP12.95□□□□□ -0.34
SHMT2-235ENST00000557740 RNF130Q86XS8 419 aa12.95□□□□□ -0.34
SHMT2-235ENST00000557740 UBE2J2Q8N2K1 259 aa12.95□□□□□ -0.34
SHMT2-235ENST00000557740 ANKRD42Q8N9B4 389 aa12.95□□□□□ -0.34
SHMT2-235ENST00000557740 KBTBD8Q8NFY9 601 aa12.95□□□□□ -0.34
SHMT2-235ENST00000557740 LILRB1Q8NHL6 650 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-235ENST00000557740 SMAP2Q8WU79 429 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-235ENST00000557740 ZNF75CPQ92670 426 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-235ENST00000557740 APH1AQ96BI3 265 aa12.95□□□□□ -0.34
SHMT2-235ENST00000557740 TRMT61AQ96FX7 289 aaKnown RBP12.95□□□□□ -0.34
SHMT2-235ENST00000557740 PANX1Q96RD7 426 aa12.95□□□□□ -0.34
SHMT2-235ENST00000557740 ZBTB18Q99592 522 aa12.95□□□□□ -0.34
SHMT2-235ENST00000557740 PNPOQ9NVS9 261 aa12.95□□□□□ -0.34
SHMT2-235ENST00000557740 BTNL2Q9UIR0 455 aa12.95□□□□□ -0.34
SHMT2-235ENST00000557740 NOSIPQ9Y314 301 aaKnown RBP12.95□□□□□ -0.34
SHMT2-235ENST00000557740 HDGFL3Q9Y3E1 203 aa12.95□□□□□ -0.34
SHMT2-235ENST00000557740 IGKV3D-15A0A087WSY6 115 aa12.94□□□□□ -0.34
SHMT2-235ENST00000557740 CLDN24A6NM45 220 aa12.94□□□□□ -0.34
SHMT2-235ENST00000557740 GPR171O14626 319 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms