RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 GTPBP2Q9BX10 602 aaKnown RBP11.65□□□□□ -0.54
SHMT2-229ENST00000557348 DNAJB12Q9NXW2 375 aaKnown RBP11.65□□□□□ -0.54
SHMT2-229ENST00000557348 RPS6KB2Q9UBS0 482 aa11.65□□□□□ -0.54
SHMT2-229ENST00000557348 MED31Q9Y3C7 131 aa11.65□□□□□ -0.54
SHMT2-229ENST00000557348 CDH10Q9Y6N8 788 aa11.65□□□□□ -0.54
SHMT2-229ENST00000557348 A0A0B4J2E0 115 aa11.65□□□□□ -0.55
SHMT2-229ENST00000557348 IGHV5-10-1A0A0J9YXX1 117 aa11.65□□□□□ -0.55
SHMT2-229ENST00000557348 A0A1B0GX12 115 aa11.65□□□□□ -0.55
SHMT2-229ENST00000557348 CCDC182A6NF36 153 aa11.65□□□□□ -0.55
SHMT2-229ENST00000557348 SERINC4A6NH21 518 aa11.65□□□□□ -0.55
SHMT2-229ENST00000557348 BET1O15155 118 aa11.65□□□□□ -0.55
SHMT2-229ENST00000557348 LCKP06239 509 aa11.65□□□□□ -0.55
SHMT2-229ENST00000557348 HPGDP15428 266 aa11.65□□□□□ -0.55
SHMT2-229ENST00000557348 SPNP16150 400 aa11.65□□□□□ -0.55
SHMT2-229ENST00000557348 RFX3P48380 749 aa11.65□□□□□ -0.55
SHMT2-229ENST00000557348 RORCP51449 518 aa11.65□□□□□ -0.55
SHMT2-229ENST00000557348 GPR143P51810 404 aa11.65□□□□□ -0.55
SHMT2-229ENST00000557348 RUNX1T1Q06455 604 aa11.65□□□□□ -0.55
SHMT2-229ENST00000557348 TBRG1Q3YBR2 411 aa11.65□□□□□ -0.55
SHMT2-229ENST00000557348 ESCO2Q56NI9 601 aa11.65□□□□□ -0.55
SHMT2-229ENST00000557348 TRIM61Q5EBN2 209 aa11.65□□□□□ -0.55
SHMT2-229ENST00000557348 ULK3Q6PHR2 472 aa11.65□□□□□ -0.55
SHMT2-229ENST00000557348 METAP1DQ6UB28 335 aaPredicted RBP11.65□□□□□ -0.55
SHMT2-229ENST00000557348 HSDL2Q6YN16 418 aa11.65□□□□□ -0.55
SHMT2-229ENST00000557348 SLC29A4Q7RTT9 530 aa11.65□□□□□ -0.55
SHMT2-229ENST00000557348 SLC51BQ86UW2 128 aa11.65□□□□□ -0.55
SHMT2-229ENST00000557348 NKAIN4Q8IVV8 208 aa11.65□□□□□ -0.55
SHMT2-229ENST00000557348 NRMQ8IXM6 262 aa11.65□□□□□ -0.55
SHMT2-229ENST00000557348 EID2Q8N6I1 236 aa11.65□□□□□ -0.55
SHMT2-229ENST00000557348 ZNF614Q8N883 585 aa11.65□□□□□ -0.55
SHMT2-229ENST00000557348 OR52L1Q8NGH7 329 aa11.65□□□□□ -0.55
SHMT2-229ENST00000557348 BRIX1Q8TDN6 353 aaKnown RBP11.65□□□□□ -0.55
SHMT2-229ENST00000557348 DNAJA4Q8WW22 397 aaPredicted RBP11.65□□□□□ -0.55
SHMT2-229ENST00000557348 RFKQ969G6 155 aa11.65□□□□□ -0.55
SHMT2-229ENST00000557348 UBE2FQ969M7 185 aa11.65□□□□□ -0.55
SHMT2-229ENST00000557348 FAM46AQ96IP4 442 aaKnown RBP11.65□□□□□ -0.55
SHMT2-229ENST00000557348 GFM1Q96RP9 751 aaKnown RBP11.65□□□□□ -0.55
SHMT2-229ENST00000557348 ATP13A2Q9NQ11 1180 aa11.65□□□□□ -0.55
SHMT2-229ENST00000557348 EXOSC3Q9NQT5 275 aaKnown RBP11.65□□□□□ -0.55
SHMT2-229ENST00000557348 FBXO34Q9NWN3 711 aa11.65□□□□□ -0.55
SHMT2-229ENST00000557348 CCDC88CQ9P219 2028 aa11.65□□□□□ -0.55
SHMT2-229ENST00000557348 BAIAP2Q9UQB8 552 aa11.65□□□□□ -0.55
SHMT2-229ENST00000557348 CENPVL1A0A0U1RR11 272 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 LOC105371267A0A1B0GV96 52 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 A0A1W2PQM1 296 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 TO15178 435 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 RCBTB2O95199 551 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 CSTAP01040 98 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 C1QBP02746 253 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 CLPSP04118 112 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 NGFRP08138 427 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 GTF2E2P29084 291 aaKnown RBP11.64□□□□□ -0.55
SHMT2-229ENST00000557348 NKX2-5P52952 324 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-229ENST00000557348 CTBP2P56545 445 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 DCDP81605 110 aaKnown RBP11.64□□□□□ -0.55
SHMT2-229ENST00000557348 ST3GAL4Q11206 333 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 FOXD4Q12950 439 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-229ENST00000557348 IL11RAQ14626 422 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 NCF4Q15080 339 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 TAB1Q15750 504 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 SNAPC1Q16533 368 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 KLHL22Q53GT1 634 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 LAIR1Q6GTX8 287 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 TMPRSS11AQ6ZMR5 421 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 ZNF782Q6ZMW2 699 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-229ENST00000557348 ZNF574Q6ZN55 896 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-229ENST00000557348 ZNF620Q6ZNG0 422 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 TMPRSS11FQ6ZWK6 438 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 PRICKLE2Q7Z3G6 844 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 PPP1R3BQ86XI6 285 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 ELMOD2Q8IZ81 293 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 ZBTB44Q8NCP5 570 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 B3GNT7Q8NFL0 401 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 OR2T33Q8NG76 320 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 TMEM163Q8TC26 289 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 IFI44Q8TCB0 444 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 DOK4Q8TEW6 326 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 ZNF721Q8TF20 911 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 CCDC74BQ96LY2 380 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 PRSS27Q9BQR3 290 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 VN1R1Q9GZP7 353 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 IRF2BPLQ9H1B7 796 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 TVP23BQ9NYZ1 205 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 MKL2Q9ULH7 1088 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 TBC1D24Q9ULP9 559 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 PRELID1Q9Y255 219 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 DTX4Q9Y2E6 619 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 PCDHGA5Q9Y5G8 931 aa11.64□□□□□ -0.55
SHMT2-229ENST00000557348 NPIPA5A0A0B4J1W7 369 aa11.63□□□□□ -0.55
SHMT2-229ENST00000557348 UNC119BA6NIH7 251 aa11.63□□□□□ -0.55
SHMT2-229ENST00000557348 NPIPA7E9PJI5 369 aa11.63□□□□□ -0.55
SHMT2-229ENST00000557348 HRKO00198 91 aa11.63□□□□□ -0.55
SHMT2-229ENST00000557348 SCDO00767 359 aa11.63□□□□□ -0.55
SHMT2-229ENST00000557348 ICMTO60725 284 aa11.63□□□□□ -0.55
SHMT2-229ENST00000557348 HCN1O60741 890 aa11.63□□□□□ -0.55
SHMT2-229ENST00000557348 PPM1BO75688 479 aa11.63□□□□□ -0.55
SHMT2-229ENST00000557348 SCRG1O75711 98 aa11.63□□□□□ -0.55
SHMT2-229ENST00000557348 DDAH2O95865 285 aa11.63□□□□□ -0.55
SHMT2-229ENST00000557348 IGF2P01344 180 aa11.63□□□□□ -0.55
SHMT2-229ENST00000557348 IGKV1D-16P01601 117 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms