RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 DEFB108AA8MXU0 73 aa14.3□□□□□ -0.12
CCDC88C-209ENST00000554872 CYTIPO60759 359 aa14.3□□□□□ -0.12
CCDC88C-209ENST00000554872 ADAM11O75078 769 aa14.3□□□□□ -0.12
CCDC88C-209ENST00000554872 THBS1P07996 1170 aa14.3□□□□□ -0.12
CCDC88C-209ENST00000554872 TFPTP0C1Z6 253 aa14.3□□□□□ -0.12
CCDC88C-209ENST00000554872 NR2F1P10589 423 aa14.3□□□□□ -0.12
CCDC88C-209ENST00000554872 IST1P53990 364 aa14.3□□□□□ -0.12
CCDC88C-209ENST00000554872 CRISP3P54108 245 aa14.3□□□□□ -0.12
CCDC88C-209ENST00000554872 CSNK2A1P68400 391 aaPredicted RBP14.3□□□□□ -0.12
CCDC88C-209ENST00000554872 MERTKQ12866 999 aa14.3□□□□□ -0.12
CCDC88C-209ENST00000554872 PDK3Q15120 406 aa14.3□□□□□ -0.12
CCDC88C-209ENST00000554872 RNF220Q5VTB9 566 aa14.3□□□□□ -0.12
CCDC88C-209ENST00000554872 BLOC1S3Q6QNY0 202 aa14.3□□□□□ -0.12
CCDC88C-209ENST00000554872 TFAP2EQ6VUC0 442 aa14.3□□□□□ -0.12
CCDC88C-209ENST00000554872 TMPPEQ6ZT21 453 aa14.3□□□□□ -0.12
CCDC88C-209ENST00000554872 PEX5LQ8IYB4 626 aa14.3□□□□□ -0.12
CCDC88C-209ENST00000554872 WDR60Q8WVS4 1066 aa14.3□□□□□ -0.12
CCDC88C-209ENST00000554872 CKAP2Q8WWK9 683 aa14.3□□□□□ -0.12
CCDC88C-209ENST00000554872 NRGNQ92686 78 aa14.3□□□□□ -0.12
CCDC88C-209ENST00000554872 VPS33AQ96AX1 596 aa14.3□□□□□ -0.12
CCDC88C-209ENST00000554872 MAGEB18Q96M61 343 aa14.3□□□□□ -0.12
CCDC88C-209ENST00000554872 ALPK1Q96QP1 1244 aa14.3□□□□□ -0.12
CCDC88C-209ENST00000554872 MED18Q9BUE0 208 aa14.3□□□□□ -0.12
CCDC88C-209ENST00000554872 QRSL1Q9H0R6 528 aaKnown RBP14.3□□□□□ -0.12
CCDC88C-209ENST00000554872 RAD21L1Q9H4I0 556 aa14.3□□□□□ -0.12
CCDC88C-209ENST00000554872 SLC52A3Q9NQ40 469 aa14.3□□□□□ -0.12
CCDC88C-209ENST00000554872 CHRNA9Q9UGM1 479 aa14.3□□□□□ -0.12
CCDC88C-209ENST00000554872 CLEC4AQ9UMR7 237 aa14.3□□□□□ -0.12
CCDC88C-209ENST00000554872 HDGFL3Q9Y3E1 203 aa14.3□□□□□ -0.12
CCDC88C-209ENST00000554872 AKAP6Q13023 2319 aa14.3□□□□□ -0.12
CCDC88C-209ENST00000554872 IGKV3D-15A0A087WSY6 115 aa14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 A0A096LPI6 279 aa14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 CDHR4A6H8M9 788 aa14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 ZNF724A8MTY0 619 aa14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 SMAD9O15198 467 aaKnown RBP14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 CYP7B1O75881 506 aa14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 ANP32DO95626 131 aa14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 PMS2P2O95744 297 aa14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 YES1P07947 543 aa14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 ETFAP13804 333 aa14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 KCNJ5P48544 419 aa14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 DIO1P49895 249 aa14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 DSTNP60981 165 aa14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 LIN52Q52LA3 116 aa14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 TMEM201Q5SNT2 666 aa14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 MRPL2Q5T653 305 aaKnown RBP14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 ABLIM2Q6H8Q1 611 aa14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 PPP4R4Q6NUP7 873 aa14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 DNAJC14Q6Y2X3 702 aaPredicted RBP14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 STAC2Q6ZMT1 411 aa14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 FUNDC1Q8IVP5 155 aa14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 GABRG1Q8N1C3 465 aa14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 PNPT1Q8TCS8 783 aaKnown RBP14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 SLC38A5Q8WUX1 472 aa14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 DYDC1Q8WWB3 177 aa14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 ROBO4Q8WZ75 1007 aa14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 CNOT9Q92600 299 aaKnown RBP14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 SLC35B4Q969S0 331 aa14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 USB1Q9BQ65 265 aaKnown RBP14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 PSD2Q9BQI7 771 aa14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 EBF4Q9BQW3 602 aa14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 SIKE1Q9BRV8 207 aa14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 A4GALTQ9NPC4 353 aa14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 ING1Q9UK53 422 aaPredicted RBP14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 ITGB1BP2Q9UKP3 347 aa14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 GPR52Q9Y2T5 361 aa14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 PCDHB14Q9Y5E9 798 aa14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 TEP1Q99973 2627 aaKnown RBP14.29□□□□□ -0.12
CCDC88C-209ENST00000554872 A0A1W2PNR3 127 aa14.28□□□□□ -0.12
CCDC88C-209ENST00000554872 CLDN24A6NM45 220 aa14.28□□□□□ -0.12
CCDC88C-209ENST00000554872 SIAH2O43255 324 aa14.28□□□□□ -0.12
CCDC88C-209ENST00000554872 ZNF208O43345 1280 aa14.28□□□□□ -0.12
CCDC88C-209ENST00000554872 ATE1O95260 518 aa14.28□□□□□ -0.12
CCDC88C-209ENST00000554872 CNOT4O95628 575 aaKnown RBP14.28□□□□□ -0.12
CCDC88C-209ENST00000554872 RAF1P04049 648 aa14.28□□□□□ -0.12
CCDC88C-209ENST00000554872 UQCRBP14927 111 aa14.28□□□□□ -0.12
CCDC88C-209ENST00000554872 IL7RP16871 459 aa14.28□□□□□ -0.12
CCDC88C-209ENST00000554872 ENPP1P22413 925 aa14.28□□□□□ -0.12
CCDC88C-209ENST00000554872 PPIBP23284 216 aaKnown RBP14.28□□□□□ -0.12
CCDC88C-209ENST00000554872 DNASE1P24855 282 aa14.28□□□□□ -0.12
CCDC88C-209ENST00000554872 SLC1A3P43003 542 aa14.28□□□□□ -0.12
CCDC88C-209ENST00000554872 CRATP43155 626 aa14.28□□□□□ -0.12
CCDC88C-209ENST00000554872 ART1P52961 327 aa14.28□□□□□ -0.12
CCDC88C-209ENST00000554872 AQP5P55064 265 aa14.28□□□□□ -0.12
CCDC88C-209ENST00000554872 EPS8Q12929 822 aa14.28□□□□□ -0.12
CCDC88C-209ENST00000554872 RGNQ15493 299 aa14.28□□□□□ -0.12
CCDC88C-209ENST00000554872 GTDC1Q4AE62 458 aa14.28□□□□□ -0.12
CCDC88C-209ENST00000554872 C6orf10Q5SRN2 563 aa14.28□□□□□ -0.12
CCDC88C-209ENST00000554872 FBXW10Q5XX13 1052 aa14.28□□□□□ -0.12
CCDC88C-209ENST00000554872 ZNF563Q8TA94 476 aa14.28□□□□□ -0.12
CCDC88C-209ENST00000554872 SPDL1Q96EA4 605 aa14.28□□□□□ -0.12
CCDC88C-209ENST00000554872 OR5B2Q96R09 309 aa14.28□□□□□ -0.12
CCDC88C-209ENST00000554872 HDHD5Q9BXW7 423 aa14.28□□□□□ -0.12
CCDC88C-209ENST00000554872 LIME1Q9H400 295 aa14.28□□□□□ -0.12
CCDC88C-209ENST00000554872 BCL2L10Q9HD36 194 aa14.28□□□□□ -0.12
CCDC88C-209ENST00000554872 CTPS2Q9NRF8 586 aa14.28□□□□□ -0.12
CCDC88C-209ENST00000554872 KLHL28Q9NXS3 571 aa14.28□□□□□ -0.12
CCDC88C-209ENST00000554872 TRAPPC4Q9Y296 219 aa14.28□□□□□ -0.12
CCDC88C-209ENST00000554872 ITPR3Q14573 2671 aa14.28□□□□□ -0.12
CCDC88C-209ENST00000554872 UQCRHLA0A096LP55 91 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms