RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 DACH2Q96NX9 599 aa13.73□□□□□ -0.21
SHMT2-204ENST00000553324 TACO1Q9BSH4 297 aaKnown RBP13.73□□□□□ -0.21
SHMT2-204ENST00000553324 CCDC106Q9BWC9 280 aa13.73□□□□□ -0.21
SHMT2-204ENST00000553324 ZNF385DQ9H6B1 395 aa13.73□□□□□ -0.21
SHMT2-204ENST00000553324 DNAJB12Q9NXW2 375 aaKnown RBP13.73□□□□□ -0.21
SHMT2-204ENST00000553324 GALNT8Q9NY28 637 aa13.73□□□□□ -0.21
SHMT2-204ENST00000553324 SLC25A37Q9NYZ2 338 aa13.73□□□□□ -0.21
SHMT2-204ENST00000553324 VAPAQ9P0L0 249 aa13.73□□□□□ -0.21
SHMT2-204ENST00000553324 SLAMF8Q9P0V8 285 aa13.73□□□□□ -0.21
SHMT2-204ENST00000553324 CHRNA9Q9UGM1 479 aa13.73□□□□□ -0.21
SHMT2-204ENST00000553324 HCFC1P51610 2035 aa13.73□□□□□ -0.21
SHMT2-204ENST00000553324 CDHR4A6H8M9 788 aa13.72□□□□□ -0.21
SHMT2-204ENST00000553324 CGAP01215 116 aa13.72□□□□□ -0.21
SHMT2-204ENST00000553324 ETS2P15036 469 aa13.72□□□□□ -0.21
SHMT2-204ENST00000553324 GPX2P18283 190 aa13.72□□□□□ -0.21
SHMT2-204ENST00000553324 SHC1P29353 583 aa13.72□□□□□ -0.21
SHMT2-204ENST00000553324 SLC1A3P43003 542 aa13.72□□□□□ -0.21
SHMT2-204ENST00000553324 COPZ1P61923 177 aa13.72□□□□□ -0.21
SHMT2-204ENST00000553324 SYT14P1Q58G82 188 aa13.72□□□□□ -0.21
SHMT2-204ENST00000553324 TMEM201Q5SNT2 666 aa13.72□□□□□ -0.21
SHMT2-204ENST00000553324 GCNT6Q5T4J0 391 aa13.72□□□□□ -0.21
SHMT2-204ENST00000553324 RNF220Q5VTB9 566 aa13.72□□□□□ -0.21
SHMT2-204ENST00000553324 TMPPEQ6ZT21 453 aa13.72□□□□□ -0.21
SHMT2-204ENST00000553324 FCRLAQ7L513 359 aa13.72□□□□□ -0.21
SHMT2-204ENST00000553324 HMGN2P46Q86SG4 172 aa13.72□□□□□ -0.21
SHMT2-204ENST00000553324 KRT73Q86Y46 540 aa13.72□□□□□ -0.21
SHMT2-204ENST00000553324 ZZZ3Q8IYH5 903 aa13.72□□□□□ -0.21
SHMT2-204ENST00000553324 DPP10Q8N608 796 aa13.72□□□□□ -0.21
SHMT2-204ENST00000553324 BBS10Q8TAM1 723 aa13.72□□□□□ -0.21
SHMT2-204ENST00000553324 RNF128Q8TEB7 428 aa13.72□□□□□ -0.21
SHMT2-204ENST00000553324 SLC35B4Q969S0 331 aa13.72□□□□□ -0.21
SHMT2-204ENST00000553324 ZNF524Q96C55 264 aa13.72□□□□□ -0.21
SHMT2-204ENST00000553324 OR5B2Q96R09 309 aa13.72□□□□□ -0.21
SHMT2-204ENST00000553324 SPATA5L1Q9BVQ7 753 aa13.72□□□□□ -0.21
SHMT2-204ENST00000553324 SPATA9Q9BWV2 254 aa13.72□□□□□ -0.21
SHMT2-204ENST00000553324 TMEM120AQ9BXJ8 343 aa13.72□□□□□ -0.21
SHMT2-204ENST00000553324 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-204ENST00000553324 EDARQ9UNE0 448 aa13.72□□□□□ -0.21
SHMT2-204ENST00000553324 HDGFL3Q9Y3E1 203 aa13.72□□□□□ -0.21
SHMT2-204ENST00000553324 DCHS2Q6V1P9 2916 aa13.72□□□□□ -0.21
SHMT2-204ENST00000553324 TEX15Q9BXT5 2789 aa13.71□□□□□ -0.21
SHMT2-204ENST00000553324 CASKO14936 926 aa13.71□□□□□ -0.21
SHMT2-204ENST00000553324 BCAS1O75363 584 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-204ENST00000553324 PGM3O95394 542 aa13.71□□□□□ -0.21
SHMT2-204ENST00000553324 TFPIP10646 304 aa13.71□□□□□ -0.21
SHMT2-204ENST00000553324 POU2F1P14859 743 aa13.71□□□□□ -0.21
SHMT2-204ENST00000553324 ENPP1P22413 925 aa13.71□□□□□ -0.21
SHMT2-204ENST00000553324 SLC6A2P23975 617 aa13.71□□□□□ -0.21
SHMT2-204ENST00000553324 ADSLP30566 484 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-204ENST00000553324 CPOXP36551 454 aa13.71□□□□□ -0.21
SHMT2-204ENST00000553324 CD79BP40259 229 aa13.71□□□□□ -0.21
SHMT2-204ENST00000553324 KCNJ5P48544 419 aa13.71□□□□□ -0.21
SHMT2-204ENST00000553324 POLR2HP52434 150 aaKnown RBP13.71□□□□□ -0.21
SHMT2-204ENST00000553324 GUCY1A3Q02108 690 aa13.71□□□□□ -0.21
SHMT2-204ENST00000553324 EPS8Q12929 822 aa13.71□□□□□ -0.21
SHMT2-204ENST00000553324 SNTB1Q13884 538 aaKnown RBP13.71□□□□□ -0.21
SHMT2-204ENST00000553324 RUNDC3AQ59EK9 446 aa13.71□□□□□ -0.21
SHMT2-204ENST00000553324 ZNF311Q5JNZ3 666 aa13.71□□□□□ -0.21
SHMT2-204ENST00000553324 REEP3Q6NUK4 255 aa13.71□□□□□ -0.21
SHMT2-204ENST00000553324 ZNF474Q6S9Z5 364 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-204ENST00000553324 DLEU7Q6UYE1 221 aa13.71□□□□□ -0.21
SHMT2-204ENST00000553324 BEND4Q6ZU67 534 aa13.71□□□□□ -0.21
SHMT2-204ENST00000553324 TMEM200AQ86VY9 491 aa13.71□□□□□ -0.21
SHMT2-204ENST00000553324 VRK2Q86Y07 508 aa13.71□□□□□ -0.21
SHMT2-204ENST00000553324 ADGRG3Q86Y34 549 aa13.71□□□□□ -0.21
SHMT2-204ENST00000553324 MSRB3Q8IXL7 192 aa13.71□□□□□ -0.21
SHMT2-204ENST00000553324 ZNF610Q8N9Z0 462 aa13.71□□□□□ -0.21
SHMT2-204ENST00000553324 ROBO4Q8WZ75 1007 aa13.71□□□□□ -0.21
SHMT2-204ENST00000553324 DDIT4LQ96D03 193 aa13.71□□□□□ -0.21
SHMT2-204ENST00000553324 ZHX1-C8orf76Q96EF9 292 aa13.71□□□□□ -0.21
SHMT2-204ENST00000553324 DOCK7Q96N67 2140 aa13.71□□□□□ -0.21
SHMT2-204ENST00000553324 TMEM38AQ9H6F2 299 aa13.71□□□□□ -0.21
SHMT2-204ENST00000553324 CTPS2Q9NRF8 586 aa13.71□□□□□ -0.21
SHMT2-204ENST00000553324 FGFR1OP2Q9NVK5 253 aa13.71□□□□□ -0.21
SHMT2-204ENST00000553324 KLHL9Q9P2J3 617 aa13.71□□□□□ -0.21
SHMT2-204ENST00000553324 ZNF443Q9Y2A4 671 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-204ENST00000553324 APCP25054 2843 aa13.71□□□□□ -0.22
SHMT2-204ENST00000553324 TRBV5-3A0A0A0MS03 114 aa13.7□□□□□ -0.22
SHMT2-204ENST00000553324 A0A1W2PNR3 127 aa13.7□□□□□ -0.22
SHMT2-204ENST00000553324 FAM221AA4D161 298 aa13.7□□□□□ -0.22
SHMT2-204ENST00000553324 C16orf97H3BN30 126 aa13.7□□□□□ -0.22
SHMT2-204ENST00000553324 SULT2B1O00204 365 aa13.7□□□□□ -0.22
SHMT2-204ENST00000553324 ZNF208O43345 1280 aa13.7□□□□□ -0.22
SHMT2-204ENST00000553324 DNPH1O43598 174 aa13.7□□□□□ -0.22
SHMT2-204ENST00000553324 CTAG2O75638 210 aa13.7□□□□□ -0.22
SHMT2-204ENST00000553324 YES1P07947 543 aa13.7□□□□□ -0.22
SHMT2-204ENST00000553324 NUDT7P0C024 238 aa13.7□□□□□ -0.22
SHMT2-204ENST00000553324 ARAFP10398 606 aa13.7□□□□□ -0.22
SHMT2-204ENST00000553324 MDH1P40925 334 aaKnown RBP13.7□□□□□ -0.22
SHMT2-204ENST00000553324 DIO1P49895 249 aa13.7□□□□□ -0.22
SHMT2-204ENST00000553324 CDK6Q00534 326 aa13.7□□□□□ -0.22
SHMT2-204ENST00000553324 FAM27E3Q08E93 113 aa13.7□□□□□ -0.22
SHMT2-204ENST00000553324 MTDHQ86UE4 582 aaKnown RBP13.7□□□□□ -0.22
SHMT2-204ENST00000553324 BHLHE22Q8NFJ8 381 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-204ENST00000553324 LINC01560Q8TB33 94 aa13.7□□□□□ -0.22
SHMT2-204ENST00000553324 MAL2Q969L2 176 aa13.7□□□□□ -0.22
SHMT2-204ENST00000553324 ZNF607Q96SK3 696 aa13.7□□□□□ -0.22
SHMT2-204ENST00000553324 SRXN1Q9BYN0 137 aa13.7□□□□□ -0.22
SHMT2-204ENST00000553324 ADAM19Q9H013 955 aa13.7□□□□□ -0.22
SHMT2-204ENST00000553324 OPN3Q9H1Y3 402 aaPredicted RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms