RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 FAAHO00519 579 aa12.68□□□□□ -0.38
PTCH1-226ENST00000553011 ADAMDEC1O15204 470 aa12.68□□□□□ -0.38
PTCH1-226ENST00000553011 CXCL13O43927 109 aa12.68□□□□□ -0.38
PTCH1-226ENST00000553011 MFN2O95140 757 aa12.68□□□□□ -0.38
PTCH1-226ENST00000553011 CLDN14O95500 239 aa12.68□□□□□ -0.38
PTCH1-226ENST00000553011 IL2RAP01589 272 aa12.68□□□□□ -0.38
PTCH1-226ENST00000553011 CHRNB4P30926 498 aa12.68□□□□□ -0.38
PTCH1-226ENST00000553011 TIMP3P35625 211 aa12.68□□□□□ -0.38
PTCH1-226ENST00000553011 ZNF136P52737 540 aa12.68□□□□□ -0.38
PTCH1-226ENST00000553011 RPS3AP61247 264 aaKnown RBP12.68□□□□□ -0.38
PTCH1-226ENST00000553011 ART3Q13508 389 aa12.68□□□□□ -0.38
PTCH1-226ENST00000553011 PON3Q15166 354 aa12.68□□□□□ -0.38
PTCH1-226ENST00000553011 SGCBQ16585 318 aa12.68□□□□□ -0.38
PTCH1-226ENST00000553011 ZSWIM7Q19AV6 140 aa12.68□□□□□ -0.38
PTCH1-226ENST00000553011 HBMQ6B0K9 141 aa12.68□□□□□ -0.38
PTCH1-226ENST00000553011 C8orf82Q6P1X6 216 aaPredicted RBP12.68□□□□□ -0.38
PTCH1-226ENST00000553011 HACD2Q6Y1H2 254 aa12.68□□□□□ -0.38
PTCH1-226ENST00000553011 ESPNLQ6ZVH7 1005 aa12.68□□□□□ -0.38
PTCH1-226ENST00000553011 MAMDC2Q7Z304 686 aaPredicted RBP12.68□□□□□ -0.38
PTCH1-226ENST00000553011 GRINAQ7Z429 371 aa12.68□□□□□ -0.38
PTCH1-226ENST00000553011 ARMC8Q8IUR7 673 aa12.68□□□□□ -0.38
PTCH1-226ENST00000553011 SLC15A3Q8IY34 581 aa12.68□□□□□ -0.38
PTCH1-226ENST00000553011 SMYD1Q8NB12 490 aa12.68□□□□□ -0.38
PTCH1-226ENST00000553011 OR2V1Q8NHB1 315 aa12.68□□□□□ -0.38
PTCH1-226ENST00000553011 FNDC9Q8TBE3 224 aa12.68□□□□□ -0.38
PTCH1-226ENST00000553011 CA5BP1Q8WTZ4 195 aa12.68□□□□□ -0.38
PTCH1-226ENST00000553011 WNT2BQ93097 391 aa12.68□□□□□ -0.38
PTCH1-226ENST00000553011 REXO5Q96IC2 774 aaKnown RBP12.68□□□□□ -0.38
PTCH1-226ENST00000553011 UCK2Q9BZX2 261 aa12.68□□□□□ -0.38
PTCH1-226ENST00000553011 ARMC7Q9H6L4 198 aa12.68□□□□□ -0.38
PTCH1-226ENST00000553011 COQ10BQ9H8M1 238 aa12.68□□□□□ -0.38
PTCH1-226ENST00000553011 PLEKHB1Q9UF11 243 aaPredicted RBP12.68□□□□□ -0.38
PTCH1-226ENST00000553011 ANKHD1Q8IWZ3 2542 aaKnown RBP12.67□□□□□ -0.38
PTCH1-226ENST00000553011 SLC22A20A6NK97 555 aa12.67□□□□□ -0.38
PTCH1-226ENST00000553011 HSPB2A8KAH6 182 aa12.67□□□□□ -0.38
PTCH1-226ENST00000553011 FAM220BPB1ANY3 271 aa12.67□□□□□ -0.38
PTCH1-226ENST00000553011 NME4O00746 187 aa12.67□□□□□ -0.38
PTCH1-226ENST00000553011 SERPINB7O75635 380 aa12.67□□□□□ -0.38
PTCH1-226ENST00000553011 UQCRBP14927 111 aa12.67□□□□□ -0.38
PTCH1-226ENST00000553011 CCNA2P20248 432 aa12.67□□□□□ -0.38
PTCH1-226ENST00000553011 COL8A1P27658 744 aa12.67□□□□□ -0.38
PTCH1-226ENST00000553011 GRNP28799 593 aaKnown RBP12.67□□□□□ -0.38
PTCH1-226ENST00000553011 TACR3P29371 465 aa12.67□□□□□ -0.38
PTCH1-226ENST00000553011 SLC1A3P43003 542 aa12.67□□□□□ -0.38
PTCH1-226ENST00000553011 SLC7A2P52569 658 aa12.67□□□□□ -0.38
PTCH1-226ENST00000553011 AGFG1P52594 562 aaKnown RBP12.67□□□□□ -0.38
PTCH1-226ENST00000553011 CRYBA2P53672 197 aa12.67□□□□□ -0.38
PTCH1-226ENST00000553011 HSPB2Q16082 182 aa12.67□□□□□ -0.38
PTCH1-226ENST00000553011 HIST2H2BCQ6DN03 193 aa12.67□□□□□ -0.38
PTCH1-226ENST00000553011 PPP4R4Q6NUP7 873 aa12.67□□□□□ -0.38
PTCH1-226ENST00000553011 C3orf33Q6P1S2 294 aa12.67□□□□□ -0.38
PTCH1-226ENST00000553011 ZNF550Q7Z398 422 aa12.67□□□□□ -0.38
PTCH1-226ENST00000553011 P4HA3Q7Z4N8 544 aa12.67□□□□□ -0.38
PTCH1-226ENST00000553011 ARPINQ7Z6K5 226 aa12.67□□□□□ -0.38
PTCH1-226ENST00000553011 PATL1Q86TB9 770 aaKnown RBP12.67□□□□□ -0.38
PTCH1-226ENST00000553011 ADGRG3Q86Y34 549 aa12.67□□□□□ -0.38
PTCH1-226ENST00000553011 SLC30A8Q8IWU4 369 aa12.67□□□□□ -0.38
PTCH1-226ENST00000553011 GCNT2Q8N0V5 402 aa12.67□□□□□ -0.38
PTCH1-226ENST00000553011 CADM2Q8N3J6 435 aa12.67□□□□□ -0.38
PTCH1-226ENST00000553011 CCDC197Q8NCU1 140 aa12.67□□□□□ -0.38
PTCH1-226ENST00000553011 LILRB4Q8NHJ6 448 aa12.67□□□□□ -0.38
PTCH1-226ENST00000553011 OSTF1Q92882 214 aa12.67□□□□□ -0.38
PTCH1-226ENST00000553011 TAMM41Q96BW9 452 aa12.67□□□□□ -0.38
PTCH1-226ENST00000553011 TM9SF2Q99805 663 aa12.67□□□□□ -0.38
PTCH1-226ENST00000553011 HOPXQ9BPY8 73 aaPredicted RBP12.67□□□□□ -0.38
PTCH1-226ENST00000553011 SERINC1Q9NRX5 453 aa12.67□□□□□ -0.38
PTCH1-226ENST00000553011 OSGIN1Q9UJX0 560 aa12.67□□□□□ -0.38
PTCH1-226ENST00000553011 CACNA1DQ01668 2161 aa12.67□□□□□ -0.38
PTCH1-226ENST00000553011 UNC79Q9P2D8 2635 aa12.66□□□□□ -0.38
PTCH1-226ENST00000553011 TMED7-TICAM2A0A0A6YYA0 188 aa12.66□□□□□ -0.38
PTCH1-226ENST00000553011 A0A1W2PNR3 127 aa12.66□□□□□ -0.38
PTCH1-226ENST00000553011 NKX2-6A6NCS4 301 aa12.66□□□□□ -0.38
PTCH1-226ENST00000553011 PRORSD1PA6NEY8 169 aa12.66□□□□□ -0.38
PTCH1-226ENST00000553011 GJE1A6NN92 205 aa12.66□□□□□ -0.38
PTCH1-226ENST00000553011 PRSS44E7EML9 344 aa12.66□□□□□ -0.38
PTCH1-226ENST00000553011 AQP8O94778 261 aa12.66□□□□□ -0.38
PTCH1-226ENST00000553011 RCBTB2O95199 551 aa12.66□□□□□ -0.38
PTCH1-226ENST00000553011 TMIGD3P0DMS9 266 aaPredicted RBP12.66□□□□□ -0.38
PTCH1-226ENST00000553011 BMP5P22003 454 aa12.66□□□□□ -0.38
PTCH1-226ENST00000553011 HTR1EP28566 365 aa12.66□□□□□ -0.38
PTCH1-226ENST00000553011 APOBEC1P41238 236 aaKnown RBP12.66□□□□□ -0.38
PTCH1-226ENST00000553011 POLR2HP52434 150 aaKnown RBP12.66□□□□□ -0.38
PTCH1-226ENST00000553011 PSME3P61289 254 aa12.66□□□□□ -0.38
PTCH1-226ENST00000553011 COPZ1P61923 177 aa12.66□□□□□ -0.38
PTCH1-226ENST00000553011 LIPEQ05469 1076 aa12.66□□□□□ -0.38
PTCH1-226ENST00000553011 FOXF2Q12947 444 aa12.66□□□□□ -0.38
PTCH1-226ENST00000553011 DUSP7Q16829 419 aa12.66□□□□□ -0.38
PTCH1-226ENST00000553011 PDSS1Q5T2R2 415 aa12.66□□□□□ -0.38
PTCH1-226ENST00000553011 INTS11Q5TA45 600 aaKnown RBP12.66□□□□□ -0.38
PTCH1-226ENST00000553011 FAM91A1Q658Y4 838 aa12.66□□□□□ -0.38
PTCH1-226ENST00000553011 ERICH5Q6P6B1 374 aa12.66□□□□□ -0.38
PTCH1-226ENST00000553011 MICU2Q8IYU8 434 aa12.66□□□□□ -0.38
PTCH1-226ENST00000553011 FITM2Q8N6M3 262 aa12.66□□□□□ -0.38
PTCH1-226ENST00000553011 OR2T12Q8NG77 320 aa12.66□□□□□ -0.38
PTCH1-226ENST00000553011 GPR32P1Q8NGA4 272 aa12.66□□□□□ -0.38
PTCH1-226ENST00000553011 INTS12Q96CB8 462 aaKnown RBP12.66□□□□□ -0.38
PTCH1-226ENST00000553011 DNAJA3Q96EY1 480 aa12.66□□□□□ -0.38
PTCH1-226ENST00000553011 OR5B2Q96R09 309 aa12.66□□□□□ -0.38
PTCH1-226ENST00000553011 WFDC6Q9BQY6 131 aa12.66□□□□□ -0.38
PTCH1-226ENST00000553011 PRR14Q9BWN1 585 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms