RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 TMIGD1Q6UXZ0 262 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 ZNF600Q6ZNG1 722 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 ASB18Q6ZVZ8 466 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 OOSP2Q86WS3 158 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 SPACA3Q8IXA5 215 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 FTMTQ8N4E7 242 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 LINC01555Q8NAE3 123 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 SYT14Q8NB59 555 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 MTFMTQ96DP5 389 aaKnown RBP7.09□□□□□ -1.27
LIMA1-216ENST00000552909 SLC38A2Q96QD8 506 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 TAAR9Q96RI9 348 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 SEC22CQ9BRL7 303 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 NLNQ9BYT8 704 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 ABCG5Q9H222 651 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 DPAGT1Q9H3H5 408 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 ZNF768Q9H5H4 540 aaKnown RBP7.09□□□□□ -1.27
LIMA1-216ENST00000552909 CDCP1Q9H5V8 836 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 DLL4Q9NR61 685 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 SIDT1Q9NXL6 827 aaKnown RBP7.09□□□□□ -1.27
LIMA1-216ENST00000552909 AKAP7Q9P0M2 348 aaPredicted RBP7.09□□□□□ -1.27
LIMA1-216ENST00000552909 NUBP2Q9Y5Y2 271 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 CACNG2Q9Y698 323 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 SPENQ96T58 3664 aaKnown RBP7.09□□□□□ -1.27
LIMA1-216ENST00000552909 GPR171O14626 319 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 KLK10O43240 276 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 APOL3O95236 402 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 CPSF4O95639 269 aaKnown RBP7.09□□□□□ -1.27
LIMA1-216ENST00000552909 NUDT7P0C024 238 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 EBLN1P0CF75 366 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 PVRP15151 417 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 EPORP19235 508 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 TNFRSF1BP20333 461 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 TACR1P25103 407 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 IMPA1P29218 277 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 PEBP1P30086 187 aaKnown RBP7.09□□□□□ -1.27
LIMA1-216ENST00000552909 GSTM5P46439 218 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 HAAOP46952 286 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 SLC6A12P48065 614 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 PCBP4P57723 403 aaKnown RBP7.09□□□□□ -1.27
LIMA1-216ENST00000552909 MC2RQ01718 297 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 TLE3Q04726 772 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 COX10Q12887 443 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 OPCMLQ14982 345 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 NTRK2Q16620 822 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 UGT8Q16880 541 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 FAM209BQ5JX69 171 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 TMEM201Q5SNT2 666 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 UNC5DQ6UXZ4 953 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 C3P1Q6ZMU1 363 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 C17orf107Q6ZR85 190 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 QSOX2Q6ZRP7 698 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 THOC6Q86W42 341 aaKnown RBP7.09□□□□□ -1.27
LIMA1-216ENST00000552909 AQP11Q8NBQ7 271 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 UXS1Q8NBZ7 420 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 FBXO15Q8NCQ5 510 aaPredicted RBP7.09□□□□□ -1.27
LIMA1-216ENST00000552909 ZNF248Q8NDW4 579 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 ZNF480Q8WV37 535 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 RFT1Q96AA3 541 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 RAD51AP1Q96B01 352 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 OTULINQ96BN8 352 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 CXorf58Q96LI9 332 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 OR6C1Q96RD1 312 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 ACPTQ9BZG2 426 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 DNAJC11Q9NVH1 559 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 SEMA5BQ9P283 1151 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 COPZ2Q9P299 210 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 RALYQ9UKM9 306 aaKnown RBP7.09□□□□□ -1.27
LIMA1-216ENST00000552909 POMT2Q9UKY4 750 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 SPATA2Q9UM82 520 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 YARS2Q9Y2Z4 477 aaKnown RBP7.09□□□□□ -1.27
LIMA1-216ENST00000552909 TLCD2A6NGC4 264 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 SLC9B1P1A6NJY1 282 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 TMEM229AB2RXF0 380 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 B4E171 279 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 DNASE2O00115 360 aaPredicted RBP7.08□□□□□ -1.28
LIMA1-216ENST00000552909 LGALS8O00214 317 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 PDCD5O14737 125 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 TOX3O15405 576 aaPredicted RBP7.08□□□□□ -1.28
LIMA1-216ENST00000552909 EFSO43281 561 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 HCRTR1O43613 425 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 SSNA1O43805 119 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 TIAF1O95411 115 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 CLDN9O95484 217 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 OPN1SWP03999 348 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 SULT1A3P0DMM9 295 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 SULT1A4P0DMN0 295 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 ST6GAL1P15907 406 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 ZNF28P17035 718 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 SDC1P18827 310 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 PCGF2P35227 344 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 TSPAN7P41732 249 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 OR1E2P47887 323 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 CLN3Q13286 438 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 DSG2Q14126 1118 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 CPSF6Q16630 551 aaKnown RBP eCLIP7.08□□□□□ -1.28
LIMA1-216ENST00000552909 ARMC6Q6NXE6 501 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 CASP12Q6UXS9 341 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 LRRC70Q7Z2Q7 622 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 DTX1Q86Y01 620 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 BVESQ8NE79 360 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms