RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 HTR3DQ70Z44 454 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 PARS2Q7L3T8 475 aaKnown RBP4.5□□□□□ -1.69
LIMA1-214ENST00000552783 LINGO2Q7L985 606 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 FGD2Q7Z6J4 655 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 CMIPQ8IY22 773 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 KLHDC8AQ8IYD2 350 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 CCDC116Q8IYX3 515 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 ZNF454Q8N9F8 522 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 OR4D10Q8NGI6 311 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 SUN3Q8TAQ9 357 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 GNPDA2Q8TDQ7 276 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 ZNRF4Q8WWF5 429 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 OR8D1Q8WZ84 308 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 RAD51AP1Q96B01 352 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 RGMAQ96B86 450 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 LMLNQ96KR4 655 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 SLC35G5Q96KT7 338 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 OR14A2Q96R54 314 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 NKX3-1Q99801 234 aaPredicted RBP4.5□□□□□ -1.69
LIMA1-214ENST00000552783 EFCAB11Q9BUY7 163 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 SLC25A18Q9H1K4 315 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 WDR13Q9H1Z4 485 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 TM7SF3Q9NS93 570 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 GMEB2Q9UKD1 530 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 MRTO4Q9UKD2 239 aaKnown RBP4.5□□□□□ -1.69
LIMA1-214ENST00000552783 EML5Q05BV3 1969 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 PRUNE2Q8WUY3 3088 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 PLXNA2O75051 1894 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 SLC31A1O15431 190 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 PLPP2O43688 288 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 NARSO43776 548 aaKnown RBP4.49□□□□□ -1.69
LIMA1-214ENST00000552783 LILRB5O75023 590 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 PAK4O96013 591 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-214ENST00000552783 TIMP2P16035 220 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 EPCAMP16422 314 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 PSMB1P20618 241 aaKnown RBP4.49□□□□□ -1.69
LIMA1-214ENST00000552783 TEAD1P28347 426 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 NCBP2P52298 156 aaKnown RBP eCLIP4.49□□□□□ -1.69
LIMA1-214ENST00000552783 AKR1C2P52895 323 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 PNLIPRP1P54315 467 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 MAZP56270 477 aaKnown RBP4.49□□□□□ -1.69
LIMA1-214ENST00000552783 SMIM11AP58511 58 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 PRR5P85299 388 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 AKR1C1Q04828 323 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 ZNF169Q14929 603 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-214ENST00000552783 NDUFA9Q16795 377 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 ZNF311Q5JNZ3 666 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 C9orf64Q5T6V5 341 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 HEPHL1Q6MZM0 1159 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 FAM199XQ6PEV8 388 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-214ENST00000552783 GDF7Q7Z4P5 450 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 AMZ2Q86W34 360 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 YAF2Q8IY57 180 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 RAB42Q8N4Z0 105 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 OR9A1PQ8NGU1 263 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 SMIM4Q8WVI0 70 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 SLC25A38Q96DW6 304 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 CNRIP1Q96F85 164 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-214ENST00000552783 SPATA5L1Q9BVQ7 753 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 GPR174Q9BXC1 333 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 ARL6Q9H0F7 186 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 POT1Q9NUX5 634 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 PTTG3PQ9NZH4 202 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 SLC7A7Q9UM01 511 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 BAIAP2Q9UQB8 552 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 HS3ST2Q9Y278 367 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 OR1A2Q9Y585 309 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 CHD9Q3L8U1 2897 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 LRRK1Q38SD2 2015 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 FXYD6-FXYD2A0A087WZ82 144 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 TMEM272A0A1B0GTI8 110 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 LRRN3E7EW58 273 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 PIN1P1O15428 100 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 FMO6PO60774 539 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 PTP4A3O75365 173 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 PRNPP04156 253 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 GKN3PP0CG01 181 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 ADH5P11766 374 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 C6P13671 934 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 GABRA1P14867 456 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 SYN1P17600 705 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 GSTM3P21266 225 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 ACHEP22303 614 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 FNTBP49356 437 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 AKR1D1P51857 326 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 DEFA5Q01523 94 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 GNA13Q14344 377 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 PSRC1Q6PGN9 363 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-214ENST00000552783 SLC39A5Q6ZMH5 540 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 TMUB2Q71RG4 321 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 HDDC3Q8N4P3 179 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 TRAM1L1Q8N609 369 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 THEM6Q8WUY1 208 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 HERVK_113Q902F9 699 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 RFKQ969G6 155 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 LRRC46Q96FV0 321 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 MNTQ99583 582 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 SLC38A3Q99624 504 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 C19orf43Q9BQ61 176 aa4.49□□□□□ -1.69
LIMA1-214ENST00000552783 AIF1LQ9BQI0 150 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms