RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 GABARAPL1Q9H0R8 117 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 OSGIN1Q9UJX0 560 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 B3GNT3Q9Y2A9 372 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 NTNG1Q9Y2I2 539 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 V9GYQ6 96 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 ANKRD11Q6UB99 2663 aaPredicted RBP8.68□□□□□ -1.02
LIMA1-211ENST00000552338 ZNF407Q9C0G0 2248 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 A0A087WUU8 490 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 SH3PXD2BA1X283 911 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 C2orf72A6NCS6 295 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 CPSF4LA6NMK7 179 aaKnown RBP8.67□□□□□ -1.02
LIMA1-211ENST00000552338 K7EM74 188 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 GNB5O14775 395 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 KLF4O43474 513 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 EFNA2O43921 213 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 DIRAS1O95057 198 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 TSPAN19P0C672 248 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 RFPL3SP0C7P2 107 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 GP1BBP13224 206 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 MASP1P48740 699 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 ST13P50502 369 aaKnown RBP8.67□□□□□ -1.02
LIMA1-211ENST00000552338 ERFP50548 548 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 ZNF41P51814 821 aaPredicted RBP8.67□□□□□ -1.02
LIMA1-211ENST00000552338 POLR2HP52434 150 aaKnown RBP8.67□□□□□ -1.02
LIMA1-211ENST00000552338 GFRA1P56159 465 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 HOXC5Q00444 222 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 EGR4Q05215 589 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 BCL2A1Q16548 175 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 MICAQ29983 383 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 ALG10BQ5I7T1 473 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 DCST1Q5T197 706 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 OGFRL1Q5TC84 451 aaPredicted RBP8.67□□□□□ -1.02
LIMA1-211ENST00000552338 ZNF324BQ6AW86 544 aaPredicted RBP8.67□□□□□ -1.02
LIMA1-211ENST00000552338 OR5M10Q6IEU7 315 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 C1orf94Q6P1W5 598 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 ARSKQ6UWY0 536 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 WDR88Q6ZMY6 472 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 ASB18Q6ZVZ8 466 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 TMEM179BQ7Z7N9 219 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 SLC22A16Q86VW1 577 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 NKAIN4Q8IVV8 208 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 FAM109AQ8N4B1 249 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 TMEM251Q8N6I4 163 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 LSM14AQ8ND56 463 aaKnown RBP8.67□□□□□ -1.02
LIMA1-211ENST00000552338 ZNF563Q8TA94 476 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 SLC25A43Q8WUT9 341 aaPredicted RBP8.67□□□□□ -1.02
LIMA1-211ENST00000552338 DNAJC9Q8WXX5 260 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 SH3YL1Q96HL8 342 aaPredicted RBP8.67□□□□□ -1.02
LIMA1-211ENST00000552338 ALPK1Q96QP1 1244 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 PIGQQ9BRB3 760 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 PRR14Q9BWN1 585 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 DGCR6LQ9BY27 220 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 REEP1Q9H902 201 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 VNN3Q9NY84 501 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 B4GALT7Q9UBV7 327 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 NKX1-2Q9UD57 310 aaPredicted RBP8.67□□□□□ -1.02
LIMA1-211ENST00000552338 SLC7A7Q9UM01 511 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 TP53TG5Q9Y2B4 290 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 FRYQ5TBA9 3013 aa8.67□□□□□ -1.02
LIMA1-211ENST00000552338 TPRP12270 2363 aaKnown RBP8.66□□□□□ -1.02
LIMA1-211ENST00000552338 BSNQ9UPA5 3926 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 IGKV1D-42A0A075B6H8 117 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 E9PQ18 207 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 H0YJX3 145 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 ACOT7O00154 380 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 TNFRSF11BO00300 401 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 SUSD5O60279 629 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 HCN1O60741 890 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 RASAL1O95294 804 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 F10P00742 488 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 MT-ND1P03886 318 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 ANXA8P13928 327 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 ZNF26P17031 533 aaPredicted RBP8.66□□□□□ -1.02
LIMA1-211ENST00000552338 FUT4P22083 530 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 TACR3P29371 465 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 RYKP34925 604 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 YAP1P46937 504 aaKnown RBP8.66□□□□□ -1.02
LIMA1-211ENST00000552338 OMPP47874 163 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 ARHGDIAP52565 204 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 GPR85P60893 370 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 RAC1P63000 192 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 SPIBQ01892 262 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 PRKCDQ05655 676 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 COX10Q12887 443 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 SELENBP1Q13228 472 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 ZNF239Q16600 458 aaKnown RBP8.66□□□□□ -1.02
LIMA1-211ENST00000552338 PLEKHN1Q494U1 663 aaPredicted RBP8.66□□□□□ -1.02
LIMA1-211ENST00000552338 SLC6A19Q695T7 634 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 PPP4R4Q6NUP7 873 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 FAHD1Q6P587 224 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 PODNL1Q6PEZ8 512 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 TMPRSS11FQ6ZWK6 438 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 MBOAT2Q6ZWT7 520 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.66□□□□□ -1.02
LIMA1-211ENST00000552338 AMIGO2Q86SJ2 522 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 ZDHHC13Q8IUH4 622 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 EPHX4Q8IUS5 362 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 SIAH3Q8IW03 269 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 PACRGLQ8N7B6 248 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 EXD3Q8N9H8 876 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms