RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 ANP32DO95626 131 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 IGHV4-39P01824 125 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 TNNC2P02585 160 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 MT-ND2P03891 347 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 UGT2B4P06133 528 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 GSTA1P08263 222 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 CT45A8P0DMV1 189 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 CT45A9P0DMV2 189 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 IGHV4-31P0DP07 118 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 FGF5P12034 268 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 ADRB3P13945 408 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 RPA2P15927 270 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 MSH3P20585 1137 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 ACKR3P25106 362 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 AK4P27144 223 aaPredicted RBP3.31□□□□□ -1.88
LIMA1-208ENST00000551691 PTPN4P29074 926 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 PRDX2P32119 198 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 CDKN1AP38936 164 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 ARFIP1P53367 373 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 TNNC1P63316 161 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 RPL24P83731 157 aaKnown RBP3.31□□□□□ -1.88
LIMA1-208ENST00000551691 PMP22Q01453 160 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 RBM39Q14498 530 aaKnown RBP3.31□□□□□ -1.88
LIMA1-208ENST00000551691 NFATC4Q14934 902 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 ZMYND11Q15326 602 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 KLHL40Q2TBA0 621 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 ZNF260Q3ZCT1 412 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 LRRC37A5PQ49AS3 106 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 BOLA3Q53S33 107 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 CT45A2Q5DJT8 189 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 CCDC183Q5T5S1 534 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 XKRXQ6PP77 449 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 DHRS11Q6UWP2 260 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 C16orf47Q6ZP98 133 aaPredicted RBP3.31□□□□□ -1.88
LIMA1-208ENST00000551691 Q6ZS92 163 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 CBWD2Q8IUF1 395 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 SLC43A2Q8N370 569 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 BCORP1Q8N888 145 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 ZNF441Q8N8Z8 693 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 MLKLQ8NB16 471 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 DQX1Q8TE96 717 aaKnown RBP3.31□□□□□ -1.88
LIMA1-208ENST00000551691 CCDC127Q96BQ5 260 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 ZNF354BQ96LW1 612 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 C17orf77Q96MU5 243 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 GPA33Q99795 319 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 CCT7Q99832 543 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 APOOQ9BUR5 198 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 FGFBP2Q9BYJ0 223 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 PLA2G12AQ9BZM1 189 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 C5orf66Q9H5L9 145 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 RMND5AQ9H871 391 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 WDR76Q9H967 626 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 COG4Q9H9E3 785 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 PELI2Q9HAT8 420 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 LRRC4Q9HBW1 653 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 S100A14Q9HCY8 104 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 LHX9Q9NQ69 397 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 DYRK4Q9NR20 520 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 DDX28Q9NUL7 540 aaKnown RBP3.31□□□□□ -1.88
LIMA1-208ENST00000551691 FLRT3Q9NZU0 649 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 C6orf203Q9P0P8 240 aaPredicted RBP3.31□□□□□ -1.88
LIMA1-208ENST00000551691 LNPEPQ9UIQ6 1025 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 ZNF490Q9ULM2 529 aaPredicted RBP3.31□□□□□ -1.88
LIMA1-208ENST00000551691 PCDHA7Q9UN72 937 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 FARSAQ9Y285 508 aaKnown RBP3.31□□□□□ -1.88
LIMA1-208ENST00000551691 MFHAS1Q9Y4C4 1052 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 SELENOKQ9Y6D0 94 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 CACNA1CQ13936 2221 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 NYNRINQ9P2P1 1898 aaKnown RBP3.3□□□□□ -1.88
LIMA1-208ENST00000551691 TRRAPQ9Y4A5 3859 aa3.3□□□□□ -1.88
LIMA1-208ENST00000551691 A0A0U1RQS6 177 aa3.3□□□□□ -1.88
LIMA1-208ENST00000551691 PLSCR5A0PG75 271 aa3.3□□□□□ -1.88
LIMA1-208ENST00000551691 TLCD2A6NGC4 264 aa3.3□□□□□ -1.88
LIMA1-208ENST00000551691 YJEFN3A6XGL0 299 aa3.3□□□□□ -1.88
LIMA1-208ENST00000551691 ZNF732B4DXR9 585 aa3.3□□□□□ -1.88
LIMA1-208ENST00000551691 E7ENQ6 273 aa3.3□□□□□ -1.88
LIMA1-208ENST00000551691 ZNF587BE7ETH6 402 aa3.3□□□□□ -1.88
LIMA1-208ENST00000551691 C16orf97H3BN30 126 aa3.3□□□□□ -1.88
LIMA1-208ENST00000551691 ATP6V0E1O15342 81 aa3.3□□□□□ -1.88
LIMA1-208ENST00000551691 CYTIPO60759 359 aa3.3□□□□□ -1.88
LIMA1-208ENST00000551691 ZNF821O75541 412 aaPredicted RBP3.3□□□□□ -1.88
LIMA1-208ENST00000551691 EPOP01588 193 aa3.3□□□□□ -1.88
LIMA1-208ENST00000551691 ATP1A1P05023 1023 aaKnown RBP3.3□□□□□ -1.88
LIMA1-208ENST00000551691 KRT8P05787 483 aa3.3□□□□□ -1.88
LIMA1-208ENST00000551691 PLEKP08567 350 aaPredicted RBP3.3□□□□□ -1.88
LIMA1-208ENST00000551691 FUT1P19526 365 aa3.3□□□□□ -1.88
LIMA1-208ENST00000551691 AADACP22760 399 aa3.3□□□□□ -1.88
LIMA1-208ENST00000551691 PBLDP30039 288 aaPredicted RBP3.3□□□□□ -1.88
LIMA1-208ENST00000551691 CASP4P49662 377 aa3.3□□□□□ -1.88
LIMA1-208ENST00000551691 ABCE1P61221 599 aaKnown RBP3.3□□□□□ -1.88
LIMA1-208ENST00000551691 CDR2Q01850 454 aa3.3□□□□□ -1.88
LIMA1-208ENST00000551691 MRPL28Q13084 256 aaKnown RBP3.3□□□□□ -1.88
LIMA1-208ENST00000551691 SNTB2Q13425 540 aaKnown RBP3.3□□□□□ -1.88
LIMA1-208ENST00000551691 KRT81Q14533 505 aa3.3□□□□□ -1.88
LIMA1-208ENST00000551691 EXOSC7Q15024 291 aaKnown RBP3.3□□□□□ -1.88
LIMA1-208ENST00000551691 IRF4Q15306 451 aa3.3□□□□□ -1.88
LIMA1-208ENST00000551691 C3AR1Q16581 482 aa3.3□□□□□ -1.88
LIMA1-208ENST00000551691 PDK4Q16654 411 aa3.3□□□□□ -1.88
LIMA1-208ENST00000551691 KRTAP24-1Q3LI83 254 aa3.3□□□□□ -1.88
LIMA1-208ENST00000551691 GPR33Q49SQ1 333 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms