RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 SAGP10523 405 aaPredicted RBP13.3□□□□□ -0.28
CLSTN3-216ENST00000545663 COL8A2P25067 703 aa13.3□□□□□ -0.28
CLSTN3-216ENST00000545663 GTF2H2Q13888 395 aa13.3□□□□□ -0.28
CLSTN3-216ENST00000545663 CASP8Q14790 479 aa13.3□□□□□ -0.28
CLSTN3-216ENST00000545663 CD226Q15762 336 aa13.3□□□□□ -0.28
CLSTN3-216ENST00000545663 TOMM34Q15785 309 aaPredicted RBP13.3□□□□□ -0.28
CLSTN3-216ENST00000545663 FRG2Q64ET8 278 aa13.3□□□□□ -0.28
CLSTN3-216ENST00000545663 GTF2H2CQ6P1K8 395 aa13.3□□□□□ -0.28
CLSTN3-216ENST00000545663 SLC16A11Q8NCK7 471 aa13.3□□□□□ -0.28
CLSTN3-216ENST00000545663 NANPQ8TBE9 248 aa13.3□□□□□ -0.28
CLSTN3-216ENST00000545663 EPS8L3Q8TE67 593 aaKnown RBP13.3□□□□□ -0.28
CLSTN3-216ENST00000545663 APH1AQ96BI3 265 aa13.3□□□□□ -0.28
CLSTN3-216ENST00000545663 FRG2BQ96QU4 278 aa13.3□□□□□ -0.28
CLSTN3-216ENST00000545663 FAIM2Q9BWQ8 316 aa13.3□□□□□ -0.28
CLSTN3-216ENST00000545663 TMEM129A0AVI4 362 aa13.29□□□□□ -0.28
CLSTN3-216ENST00000545663 SMIM23A6NLE4 172 aa13.29□□□□□ -0.28
CLSTN3-216ENST00000545663 GJE1A6NN92 205 aa13.29□□□□□ -0.28
CLSTN3-216ENST00000545663 OR7A17O14581 309 aa13.29□□□□□ -0.28
CLSTN3-216ENST00000545663 PIN1P1O15428 100 aa13.29□□□□□ -0.28
CLSTN3-216ENST00000545663 UGDHO60701 494 aa13.29□□□□□ -0.28
CLSTN3-216ENST00000545663 IL3P08700 152 aa13.29□□□□□ -0.28
CLSTN3-216ENST00000545663 ADRA2AP08913 450 aa13.29□□□□□ -0.28
CLSTN3-216ENST00000545663 FPR2P25090 351 aa13.29□□□□□ -0.28
CLSTN3-216ENST00000545663 EIF1P41567 113 aaKnown RBP13.29□□□□□ -0.28
CLSTN3-216ENST00000545663 GPR6P46095 362 aaPredicted RBP13.29□□□□□ -0.28
CLSTN3-216ENST00000545663 ZP4Q12836 540 aa13.29□□□□□ -0.28
CLSTN3-216ENST00000545663 PFKFB4Q16877 469 aa13.29□□□□□ -0.28
CLSTN3-216ENST00000545663 ELFN2Q5R3F8 820 aa13.29□□□□□ -0.28
CLSTN3-216ENST00000545663 CEP85LQ5SZL2 805 aa13.29□□□□□ -0.28
CLSTN3-216ENST00000545663 TMEM107Q6UX40 140 aa13.29□□□□□ -0.28
CLSTN3-216ENST00000545663 RBMS3Q6XE24 437 aaKnown RBP13.29□□□□□ -0.28
CLSTN3-216ENST00000545663 FAM9CQ8IZT9 166 aa13.29□□□□□ -0.28
CLSTN3-216ENST00000545663 TEX29Q8N6K0 151 aa13.29□□□□□ -0.28
CLSTN3-216ENST00000545663 GOLGA6L1Q8N7Z2 621 aa13.29□□□□□ -0.28
CLSTN3-216ENST00000545663 B4GALNT2Q8NHY0 566 aa13.29□□□□□ -0.28
CLSTN3-216ENST00000545663 NOL11Q9H8H0 719 aaKnown RBP13.29□□□□□ -0.28
CLSTN3-216ENST00000545663 MID2Q9UJV3 735 aa13.29□□□□□ -0.28
CLSTN3-216ENST00000545663 MRTO4Q9UKD2 239 aaKnown RBP13.29□□□□□ -0.28
CLSTN3-216ENST00000545663 AMDHD2Q9Y303 409 aa13.29□□□□□ -0.28
CLSTN3-216ENST00000545663 PDLIM1O00151 329 aa13.28□□□□□ -0.28
CLSTN3-216ENST00000545663 UPK1AO00322 258 aa13.28□□□□□ -0.28
CLSTN3-216ENST00000545663 PLPP2O43688 288 aa13.28□□□□□ -0.28
CLSTN3-216ENST00000545663 COQ9O75208 318 aa13.28□□□□□ -0.28
CLSTN3-216ENST00000545663 GLRA3O75311 464 aa13.28□□□□□ -0.28
CLSTN3-216ENST00000545663 FSHBP01225 129 aa13.28□□□□□ -0.28
CLSTN3-216ENST00000545663 TFP02787 698 aa13.28□□□□□ -0.28
CLSTN3-216ENST00000545663 ERCC1P07992 297 aaPredicted RBP13.28□□□□□ -0.28
CLSTN3-216ENST00000545663 ELK4P28324 431 aa13.28□□□□□ -0.28
CLSTN3-216ENST00000545663 SLC7A1P30825 629 aa13.28□□□□□ -0.28
CLSTN3-216ENST00000545663 ARL1P40616 181 aaPredicted RBP13.28□□□□□ -0.28
CLSTN3-216ENST00000545663 SLC1A3P43003 542 aa13.28□□□□□ -0.28
CLSTN3-216ENST00000545663 PSMD4P55036 377 aaKnown RBP13.28□□□□□ -0.28
CLSTN3-216ENST00000545663 HIKESHIQ53FT3 197 aa13.28□□□□□ -0.28
CLSTN3-216ENST00000545663 TTC19Q6DKK2 380 aaPredicted RBP13.28□□□□□ -0.28
CLSTN3-216ENST00000545663 METTL2BQ6P1Q9 378 aaKnown RBP13.28□□□□□ -0.28
CLSTN3-216ENST00000545663 CDK20Q8IZL9 346 aa13.28□□□□□ -0.28
CLSTN3-216ENST00000545663 C1orf52Q8N6N3 182 aaKnown RBP13.28□□□□□ -0.28
CLSTN3-216ENST00000545663 ZNF527Q8NB42 609 aa13.28□□□□□ -0.28
CLSTN3-216ENST00000545663 MZB1Q8WU39 189 aa13.28□□□□□ -0.28
CLSTN3-216ENST00000545663 ZIM3Q96PE6 472 aa13.28□□□□□ -0.28
CLSTN3-216ENST00000545663 MRPL57Q9BQC6 102 aaKnown RBP13.28□□□□□ -0.28
CLSTN3-216ENST00000545663 IQCGQ9H095 443 aaKnown RBP13.28□□□□□ -0.28
CLSTN3-216ENST00000545663 SLC35C2Q9NQQ7 365 aa13.28□□□□□ -0.28
CLSTN3-216ENST00000545663 MALT1Q9UDY8 824 aa13.28□□□□□ -0.28
CLSTN3-216ENST00000545663 OPN4Q9UHM6 478 aa13.28□□□□□ -0.28
CLSTN3-216ENST00000545663 GRID1Q9ULK0 1009 aa13.28□□□□□ -0.28
CLSTN3-216ENST00000545663 C19orf53Q9UNZ5 99 aaPredicted RBP13.28□□□□□ -0.28
CLSTN3-216ENST00000545663 NOSIPQ9Y314 301 aaKnown RBP13.28□□□□□ -0.28
CLSTN3-216ENST00000545663 ACTL7BQ9Y614 415 aa13.28□□□□□ -0.28
CLSTN3-216ENST00000545663 WNK2Q9Y3S1 2297 aa13.27□□□□□ -0.28
CLSTN3-216ENST00000545663 PSMG1O95456 288 aa13.27□□□□□ -0.29
CLSTN3-216ENST00000545663 H6PDO95479 791 aa13.27□□□□□ -0.29
CLSTN3-216ENST00000545663 JUNP05412 331 aaKnown RBP13.27□□□□□ -0.29
CLSTN3-216ENST00000545663 TAC1P20366 129 aa13.27□□□□□ -0.29
CLSTN3-216ENST00000545663 CRHR1P34998 444 aa13.27□□□□□ -0.29
CLSTN3-216ENST00000545663 THBS4P35443 961 aa13.27□□□□□ -0.29
CLSTN3-216ENST00000545663 TUSC1Q2TAM9 212 aa13.27□□□□□ -0.29
CLSTN3-216ENST00000545663 CCDC153Q494R4 210 aa13.27□□□□□ -0.29
CLSTN3-216ENST00000545663 CBLN3Q6UW01 205 aa13.27□□□□□ -0.29
CLSTN3-216ENST00000545663 SPATA21Q7Z572 469 aa13.27□□□□□ -0.29
CLSTN3-216ENST00000545663 CENPLQ8N0S6 344 aaPredicted RBP13.27□□□□□ -0.29
CLSTN3-216ENST00000545663 BCL6BQ8N143 479 aaPredicted RBP13.27□□□□□ -0.29
CLSTN3-216ENST00000545663 CCDC126Q96EE4 140 aa13.27□□□□□ -0.29
CLSTN3-216ENST00000545663 OR5B2Q96R09 309 aa13.27□□□□□ -0.29
CLSTN3-216ENST00000545663 LMF2Q9BU23 707 aaKnown RBP13.27□□□□□ -0.29
CLSTN3-216ENST00000545663 MRPL46Q9H2W6 279 aaKnown RBP13.27□□□□□ -0.29
CLSTN3-216ENST00000545663 SEC61A2Q9H9S3 476 aa13.27□□□□□ -0.29
CLSTN3-216ENST00000545663 SLC52A3Q9NQ40 469 aa13.27□□□□□ -0.29
CLSTN3-216ENST00000545663 MKS1Q9NXB0 559 aa13.27□□□□□ -0.29
CLSTN3-216ENST00000545663 FBXO9Q9UK97 447 aaPredicted RBP13.27□□□□□ -0.29
CLSTN3-216ENST00000545663 TNPO3Q9Y5L0 923 aaKnown RBP13.27□□□□□ -0.29
CLSTN3-216ENST00000545663 IGKV3D-15A0A087WSY6 115 aa13.26□□□□□ -0.29
CLSTN3-216ENST00000545663 ZNF716A6NP11 495 aa13.26□□□□□ -0.29
CLSTN3-216ENST00000545663 M0QZ24 198 aa13.26□□□□□ -0.29
CLSTN3-216ENST00000545663 COPEO14579 308 aa13.26□□□□□ -0.29
CLSTN3-216ENST00000545663 SMIM24O75264 130 aa13.26□□□□□ -0.29
CLSTN3-216ENST00000545663 KCNH1O95259 989 aa13.26□□□□□ -0.29
CLSTN3-216ENST00000545663 MPZL1O95297 269 aa13.26□□□□□ -0.29
CLSTN3-216ENST00000545663 KRT4P19013 534 aa13.26□□□□□ -0.29
CLSTN3-216ENST00000545663 CDH2P19022 906 aaPredicted RBP13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms