RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 PRKAG1P54619 331 aa11.26□□□□□ -0.61
USP28-212ENST00000544750 SUMO3P55854 103 aaPredicted RBP11.26□□□□□ -0.61
USP28-212ENST00000544750 WDR4P57081 412 aaKnown RBP11.26□□□□□ -0.61
USP28-212ENST00000544750 SELENBP1Q13228 472 aa11.26□□□□□ -0.61
USP28-212ENST00000544750 CASP8Q14790 479 aa11.26□□□□□ -0.61
USP28-212ENST00000544750 CHI3L2Q15782 390 aa11.26□□□□□ -0.61
USP28-212ENST00000544750 SWI5Q1ZZU3 235 aa11.26□□□□□ -0.61
USP28-212ENST00000544750 MST1LQ2TV78 715 aa11.26□□□□□ -0.61
USP28-212ENST00000544750 KLHL26Q53HC5 615 aa11.26□□□□□ -0.61
USP28-212ENST00000544750 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.26□□□□□ -0.61
USP28-212ENST00000544750 ZCCHC12Q6PEW1 402 aa11.26□□□□□ -0.61
USP28-212ENST00000544750 GALNT5Q7Z7M9 940 aa11.26□□□□□ -0.61
USP28-212ENST00000544750 NUDCD3Q8IVD9 361 aa11.26□□□□□ -0.61
USP28-212ENST00000544750 OR52N5Q8NH56 324 aa11.26□□□□□ -0.61
USP28-212ENST00000544750 PHOSPHO1Q8TCT1 267 aa11.26□□□□□ -0.61
USP28-212ENST00000544750 MRGPRX4Q96LA9 322 aa11.26□□□□□ -0.61
USP28-212ENST00000544750 C3orf30Q96M34 536 aa11.26□□□□□ -0.61
USP28-212ENST00000544750 MS4A4EQ96PG1 132 aa11.26□□□□□ -0.61
USP28-212ENST00000544750 SORT1Q99523 831 aa11.26□□□□□ -0.61
USP28-212ENST00000544750 C1orf109Q9NX04 203 aa11.26□□□□□ -0.61
USP28-212ENST00000544750 GIMAP2Q9UG22 337 aa11.26□□□□□ -0.61
USP28-212ENST00000544750 POU2F3Q9UKI9 436 aa11.26□□□□□ -0.61
USP28-212ENST00000544750 MGAM2Q2M2H8 2515 aa11.25□□□□□ -0.61
USP28-212ENST00000544750 IGKV3D-15A0A087WSY6 115 aa11.25□□□□□ -0.61
USP28-212ENST00000544750 NPIPB9F8W1W9 429 aa11.25□□□□□ -0.61
USP28-212ENST00000544750 NDUFS8O00217 210 aa11.25□□□□□ -0.61
USP28-212ENST00000544750 SEC22BO75396 215 aa11.25□□□□□ -0.61
USP28-212ENST00000544750 H6PDO95479 791 aa11.25□□□□□ -0.61
USP28-212ENST00000544750 SERPINE1P05121 402 aa11.25□□□□□ -0.61
USP28-212ENST00000544750 MYZAPP0CAP1 466 aa11.25□□□□□ -0.61
USP28-212ENST00000544750 SDC1P18827 310 aa11.25□□□□□ -0.61
USP28-212ENST00000544750 CFPP27918 469 aa11.25□□□□□ -0.61
USP28-212ENST00000544750 NTF4P34130 210 aa11.25□□□□□ -0.61
USP28-212ENST00000544750 GPC1P35052 558 aa11.25□□□□□ -0.61
USP28-212ENST00000544750 ZNF83P51522 516 aa11.25□□□□□ -0.61
USP28-212ENST00000544750 FOXG1P55316 489 aaPredicted RBP11.25□□□□□ -0.61
USP28-212ENST00000544750 GGTLC2Q14390 218 aa11.25□□□□□ -0.61
USP28-212ENST00000544750 RFTN2Q52LD8 501 aaPredicted RBP11.25□□□□□ -0.61
USP28-212ENST00000544750 FBXW9Q5XUX1 488 aa11.25□□□□□ -0.61
USP28-212ENST00000544750 ABLIM2Q6H8Q1 611 aa11.25□□□□□ -0.61
USP28-212ENST00000544750 ANKRD26P1Q6NSI1 321 aa11.25□□□□□ -0.61
USP28-212ENST00000544750 KLHL17Q6TDP4 642 aa11.25□□□□□ -0.61
USP28-212ENST00000544750 RFLNBQ8N5W9 214 aa11.25□□□□□ -0.61
USP28-212ENST00000544750 COX18Q8N8Q8 333 aa11.25□□□□□ -0.61
USP28-212ENST00000544750 ATP6V1C2Q8NEY4 427 aa11.25□□□□□ -0.61
USP28-212ENST00000544750 OTUB1Q96FW1 271 aaPredicted RBP11.25□□□□□ -0.61
USP28-212ENST00000544750 MUS81Q96NY9 551 aa11.25□□□□□ -0.61
USP28-212ENST00000544750 SOX7Q9BT81 388 aa11.25□□□□□ -0.61
USP28-212ENST00000544750 BTBD2Q9BX70 525 aa11.25□□□□□ -0.61
USP28-212ENST00000544750 DUSP22Q9NRW4 184 aa11.25□□□□□ -0.61
USP28-212ENST00000544750 CARD8Q9Y2G2 431 aa11.25□□□□□ -0.61
USP28-212ENST00000544750 NPIPA5A0A0B4J1W7 369 aa11.24□□□□□ -0.61
USP28-212ENST00000544750 A0A1W2PR80 420 aa11.24□□□□□ -0.61
USP28-212ENST00000544750 TMEM120BA0PK00 339 aa11.24□□□□□ -0.61
USP28-212ENST00000544750 ZNF716A6NP11 495 aa11.24□□□□□ -0.61
USP28-212ENST00000544750 TMEM114B3SHH9 223 aa11.24□□□□□ -0.61
USP28-212ENST00000544750 NPIPA7E9PJI5 369 aa11.24□□□□□ -0.61
USP28-212ENST00000544750 PDLIM1O00151 329 aa11.24□□□□□ -0.61
USP28-212ENST00000544750 SPRY1O43609 319 aaPredicted RBP11.24□□□□□ -0.61
USP28-212ENST00000544750 DNAJA2O60884 412 aa11.24□□□□□ -0.61
USP28-212ENST00000544750 SKAP2O75563 359 aaPredicted RBP11.24□□□□□ -0.61
USP28-212ENST00000544750 CHEK2O96017 543 aa11.24□□□□□ -0.61
USP28-212ENST00000544750 ALOX5P09917 674 aa11.24□□□□□ -0.61
USP28-212ENST00000544750 NPIPA8P0DM63 369 aa11.24□□□□□ -0.61
USP28-212ENST00000544750 APEHP13798 732 aaKnown RBP11.24□□□□□ -0.61
USP28-212ENST00000544750 HNF1AP20823 631 aa11.24□□□□□ -0.61
USP28-212ENST00000544750 BGNP21810 368 aa11.24□□□□□ -0.61
USP28-212ENST00000544750 SLC7A1P30825 629 aa11.24□□□□□ -0.61
USP28-212ENST00000544750 APOBEC3AP31941 199 aaPredicted RBP11.24□□□□□ -0.61
USP28-212ENST00000544750 PDLIM4P50479 330 aa11.24□□□□□ -0.61
USP28-212ENST00000544750 ABCE1P61221 599 aaKnown RBP11.24□□□□□ -0.61
USP28-212ENST00000544750 MAGOHP61326 146 aaKnown RBP11.24□□□□□ -0.61
USP28-212ENST00000544750 RPL38P63173 70 aaKnown RBP11.24□□□□□ -0.61
USP28-212ENST00000544750 POU6F2P78424 691 aaPredicted RBP11.24□□□□□ -0.61
USP28-212ENST00000544750 CHRNEQ04844 493 aa11.24□□□□□ -0.61
USP28-212ENST00000544750 PDE7AQ13946 482 aa11.24□□□□□ -0.61
USP28-212ENST00000544750 PDK3Q15120 406 aa11.24□□□□□ -0.61
USP28-212ENST00000544750 GABRA6Q16445 453 aa11.24□□□□□ -0.61
USP28-212ENST00000544750 CR1LQ2VPA4 569 aa11.24□□□□□ -0.61
USP28-212ENST00000544750 DDIASQ8IXT1 998 aa11.24□□□□□ -0.61
USP28-212ENST00000544750 ZNF100Q8IYN0 542 aa11.24□□□□□ -0.61
USP28-212ENST00000544750 ZNF781Q8N8C0 355 aa11.24□□□□□ -0.61
USP28-212ENST00000544750 WDR31Q8NA23 367 aa11.24□□□□□ -0.61
USP28-212ENST00000544750 FAM120BQ96EK7 910 aaKnown RBP11.24□□□□□ -0.61
USP28-212ENST00000544750 SORCS2Q96PQ0 1159 aa11.24□□□□□ -0.61
USP28-212ENST00000544750 STACQ99469 402 aa11.24□□□□□ -0.61
USP28-212ENST00000544750 CCT7Q99832 543 aa11.24□□□□□ -0.61
USP28-212ENST00000544750 ADAM19Q9H013 955 aa11.24□□□□□ -0.61
USP28-212ENST00000544750 KCNK9Q9NPC2 374 aa11.24□□□□□ -0.61
USP28-212ENST00000544750 SIRT3Q9NTG7 399 aaPredicted RBP11.24□□□□□ -0.61
USP28-212ENST00000544750 ACSS1Q9NUB1 689 aaPredicted RBP11.24□□□□□ -0.61
USP28-212ENST00000544750 GIN1Q9NXP7 522 aa11.24□□□□□ -0.61
USP28-212ENST00000544750 MALT1Q9UDY8 824 aa11.24□□□□□ -0.61
USP28-212ENST00000544750 HAO1Q9UJM8 370 aa11.24□□□□□ -0.61
USP28-212ENST00000544750 PMF1-BGLAPU3KQ54 211 aa11.24□□□□□ -0.61
USP28-212ENST00000544750 M0R1B8 84 aa11.23□□□□□ -0.61
USP28-212ENST00000544750 TCF21O43680 179 aa11.23□□□□□ -0.61
USP28-212ENST00000544750 NUDT14O95848 222 aa11.23□□□□□ -0.61
USP28-212ENST00000544750 TGFAP01135 160 aa11.23□□□□□ -0.61
USP28-212ENST00000544750 IGHV3-9P01782 118 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms