RNA–Protein interactions for RNA: ENST00000541586.5

CCM2-218, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,719 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-218ENST00000541586 MFAP5Q13361 173 aa25.32■■□□□ 1.64
CCM2-218ENST00000541586 ALG10BQ5I7T1 473 aa25.32■■□□□ 1.64
CCM2-218ENST00000541586 ZNF786Q8N393 782 aa25.32■■□□□ 1.64
CCM2-218ENST00000541586 GNPDA2Q8TDQ7 276 aa25.32■■□□□ 1.64
CCM2-218ENST00000541586 TMEM239Q8WW34 195 aa25.32■■□□□ 1.64
CCM2-218ENST00000541586 TMCO6Q96DC7 493 aa25.32■■□□□ 1.64
CCM2-218ENST00000541586 SH3YL1Q96HL8 342 aaPredicted RBP25.32■■□□□ 1.64
CCM2-218ENST00000541586 FAM46AQ96IP4 442 aaKnown RBP25.32■■□□□ 1.64
CCM2-218ENST00000541586 USP24Q9UPU5 2620 aa25.31■■□□□ 1.64
CCM2-218ENST00000541586 HEATR5AQ86XA9 2040 aa25.31■■□□□ 1.64
CCM2-218ENST00000541586 C17orf51A8MQB3 221 aa25.31■■□□□ 1.64
CCM2-218ENST00000541586 OR6B1O95007 311 aa25.31■■□□□ 1.64
CCM2-218ENST00000541586 FBXO45P0C2W1 286 aa25.31■■□□□ 1.64
CCM2-218ENST00000541586 ENDOUP21128 410 aaKnown RBP25.31■■□□□ 1.64
CCM2-218ENST00000541586 CHMP24386 653 aa25.31■■□□□ 1.64
CCM2-218ENST00000541586 CRISP1P54107 249 aa25.31■■□□□ 1.64
CCM2-218ENST00000541586 ARG2P78540 354 aa25.31■■□□□ 1.64
CCM2-218ENST00000541586 ULK3Q6PHR2 472 aa25.31■■□□□ 1.64
CCM2-218ENST00000541586 NUP54Q7Z3B4 507 aa25.31■■□□□ 1.64
CCM2-218ENST00000541586 CCDC71Q8IV32 467 aaPredicted RBP25.31■■□□□ 1.64
CCM2-218ENST00000541586 SLC15A4Q8N697 577 aa25.31■■□□□ 1.64
CCM2-218ENST00000541586 TTC9Q92623 222 aa25.31■■□□□ 1.64
CCM2-218ENST00000541586 UTP23Q9BRU9 249 aaKnown RBP25.31■■□□□ 1.64
CCM2-218ENST00000541586 ZNF696Q9H7X3 374 aa25.31■■□□□ 1.64
CCM2-218ENST00000541586 ZNF71Q9NQZ8 489 aaPredicted RBP25.31■■□□□ 1.64
CCM2-218ENST00000541586 CNIH4Q9P003 139 aa25.31■■□□□ 1.64
CCM2-218ENST00000541586 CACNA1BQ00975 2339 aa25.3■■□□□ 1.64
CCM2-218ENST00000541586 ADAM10O14672 748 aa25.3■■□□□ 1.64
CCM2-218ENST00000541586 HCRTR2O43614 444 aa25.3■■□□□ 1.64
CCM2-218ENST00000541586 SOX14O95416 240 aa25.3■■□□□ 1.64
CCM2-218ENST00000541586 PDGFAP04085 211 aa25.3■■□□□ 1.64
CCM2-218ENST00000541586 TMEM154Q6P9G4 183 aa25.3■■□□□ 1.64
CCM2-218ENST00000541586 RNF113BQ8IZP6 322 aaKnown RBP25.3■■□□□ 1.64
CCM2-218ENST00000541586 SETD9Q8NE22 299 aa25.3■■□□□ 1.64
CCM2-218ENST00000541586 APOL4Q9BPW4 351 aa25.3■■□□□ 1.64
CCM2-218ENST00000541586 HPF1Q9NWY4 346 aa25.3■■□□□ 1.64
CCM2-218ENST00000541586 MYRFQ9Y2G1 1151 aa25.3■■□□□ 1.64
CCM2-218ENST00000541586 CACNA1GO43497 2377 aa25.3■■□□□ 1.64
CCM2-218ENST00000541586 EIF4E2O60573 245 aaKnown RBP25.29■■□□□ 1.64
CCM2-218ENST00000541586 TP53P04637 393 aaPredicted RBP25.29■■□□□ 1.64
CCM2-218ENST00000541586 GSTM3P21266 225 aa25.29■■□□□ 1.64
CCM2-218ENST00000541586 CD96P40200 585 aa25.29■■□□□ 1.64
CCM2-218ENST00000541586 GSSP48637 474 aa25.29■■□□□ 1.64
CCM2-218ENST00000541586 IDH2P48735 452 aaKnown RBP25.29■■□□□ 1.64
CCM2-218ENST00000541586 CYB561P49447 251 aa25.29■■□□□ 1.64
CCM2-218ENST00000541586 CD47Q08722 323 aa25.29■■□□□ 1.64
CCM2-218ENST00000541586 PTGES3Q15185 160 aaKnown RBP25.29■■□□□ 1.64
CCM2-218ENST00000541586 OPN5Q6U736 354 aa25.29■■□□□ 1.64
CCM2-218ENST00000541586 MPP4Q96JB8 637 aa25.29■■□□□ 1.64
CCM2-218ENST00000541586 KLHDC3Q9BQ90 382 aa25.29■■□□□ 1.64
CCM2-218ENST00000541586 SCOCQ9UIL1 159 aa25.29■■□□□ 1.64
CCM2-218ENST00000541586 TP53TG5Q9Y2B4 290 aa25.29■■□□□ 1.64
CCM2-218ENST00000541586 TNRC6AQ8NDV7 1962 aaKnown RBP25.29■■□□□ 1.64
CCM2-218ENST00000541586 IGFBP1P08833 259 aaPredicted RBP25.29■■□□□ 1.64
CCM2-218ENST00000541586 POU1F1P28069 291 aa25.29■■□□□ 1.64
CCM2-218ENST00000541586 ELK4P28324 431 aa25.29■■□□□ 1.64
CCM2-218ENST00000541586 GGT2P36268 569 aa25.29■■□□□ 1.64
CCM2-218ENST00000541586 IL5RAQ01344 420 aa25.29■■□□□ 1.64
CCM2-218ENST00000541586 TSPAN31Q12999 210 aa25.29■■□□□ 1.64
CCM2-218ENST00000541586 TUBA3CQ13748 450 aa25.29■■□□□ 1.64
CCM2-218ENST00000541586 CTU2Q2VPK5 515 aaKnown RBP25.29■■□□□ 1.64
CCM2-218ENST00000541586 SPINK14Q6IE38 97 aa25.29■■□□□ 1.64
CCM2-218ENST00000541586 TUBA3EQ6PEY2 450 aa25.29■■□□□ 1.64
CCM2-218ENST00000541586 PFN4Q8NHR9 129 aa25.29■■□□□ 1.64
CCM2-218ENST00000541586 DNAJA4Q8WW22 397 aaPredicted RBP25.29■■□□□ 1.64
CCM2-218ENST00000541586 SPACA9Q96E40 222 aaPredicted RBP25.29■■□□□ 1.64
CCM2-218ENST00000541586 HS6ST2Q96MM7 605 aa25.29■■□□□ 1.64
CCM2-218ENST00000541586 ZNF426Q9BUY5 554 aa25.29■■□□□ 1.64
CCM2-218ENST00000541586 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP25.29■■□□□ 1.641e-8■■■■□ 21.4
CCM2-218ENST00000541586 SELENONQ9NZV5 590 aa25.29■■□□□ 1.64
CCM2-218ENST00000541586 LRFN1Q9P244 771 aa25.29■■□□□ 1.64
CCM2-218ENST00000541586 HSPE1-MOB4S4R3N1 261 aa25.29■■□□□ 1.64
CCM2-218ENST00000541586 KLF4O43474 513 aa25.28■■□□□ 1.64
CCM2-218ENST00000541586 CASRP41180 1078 aa25.28■■□□□ 1.64
CCM2-218ENST00000541586 GPR4P46093 362 aa25.28■■□□□ 1.64
CCM2-218ENST00000541586 SLC6A8P48029 635 aa25.28■■□□□ 1.64
CCM2-218ENST00000541586 BLMHQ13867 455 aa25.28■■□□□ 1.64
CCM2-218ENST00000541586 NTRK2Q16620 822 aa25.28■■□□□ 1.64
CCM2-218ENST00000541586 WBP2NLQ6ICG8 309 aa25.28■■□□□ 1.64
CCM2-218ENST00000541586 LINC00114Q6XXX2 140 aa25.28■■□□□ 1.64
CCM2-218ENST00000541586 OR10G3Q8NGC4 313 aa25.28■■□□□ 1.64
CCM2-218ENST00000541586 FBLIM1Q8WUP2 373 aa25.28■■□□□ 1.64
CCM2-218ENST00000541586 RNF138Q8WVD3 245 aa25.28■■□□□ 1.64
CCM2-218ENST00000541586 HAS2Q92819 552 aa25.28■■□□□ 1.64
CCM2-218ENST00000541586 C3orf49Q96BT1 292 aa25.28■■□□□ 1.64
CCM2-218ENST00000541586 KRCC1Q9NPI7 259 aaPredicted RBP25.28■■□□□ 1.64
CCM2-218ENST00000541586 ICAM5Q9UMF0 924 aa25.28■■□□□ 1.64
CCM2-218ENST00000541586 CSAG2Q9Y5P2 127 aa25.28■■□□□ 1.64
CCM2-218ENST00000541586 ZAR1LA6NP61 321 aa25.27■■□□□ 1.64
CCM2-218ENST00000541586 H3BN98 237 aa25.27■■□□□ 1.64
CCM2-218ENST00000541586 GMFGO60234 142 aa25.27■■□□□ 1.64
CCM2-218ENST00000541586 FPR3P25089 353 aa25.27■■□□□ 1.64
CCM2-218ENST00000541586 HLCSP50747 726 aa25.27■■□□□ 1.64
CCM2-218ENST00000541586 ALDH6A1Q02252 535 aaKnown RBP25.27■■□□□ 1.64
CCM2-218ENST00000541586 TMEM236Q5W0B7 351 aa25.27■■□□□ 1.64
CCM2-218ENST00000541586 MISPQ8IVT2 679 aa25.27■■□□□ 1.64
CCM2-218ENST00000541586 CYP4Z2PQ8N1L4 340 aa25.27■■□□□ 1.64
CCM2-218ENST00000541586 TM9SF4Q92544 642 aa25.27■■□□□ 1.64
CCM2-218ENST00000541586 ZNF524Q96C55 264 aa25.27■■□□□ 1.64
CCM2-218ENST00000541586 C20orf141Q9NUB4 165 aa25.27■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms