RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 LRFN5Q96NI6 719 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 TNFRSF13CQ96RJ3 184 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 SLC30A2Q9BRI3 323 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 INPP5EQ9NRR6 644 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 ASB6Q9NWX5 421 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 HAO2Q9NYQ3 351 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 SPAG17Q6Q759 2223 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 TBX1O43435 398 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 OR2B3O76000 313 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 IGF2P01344 180 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 IGKV3-11P04433 115 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 IFNA16P05015 189 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 GPR143P51810 404 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 AFF3P51826 1226 aaKnown RBP12.65□□□□□ -0.38
RTN3-210ENST00000540798 GPR50Q13585 617 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 SLC35F1Q5T1Q4 408 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 AGAP7PQ5VUJ5 663 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 PRSS42Q7Z5A4 293 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 OAFQ86UD1 273 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 FAM181AQ8N9Y4 354 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 TMEM203Q969S6 136 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 SENP5Q96HI0 755 aaPredicted RBP12.65□□□□□ -0.38
RTN3-210ENST00000540798 CCNL2Q96S94 520 aaPredicted RBP12.65□□□□□ -0.38
RTN3-210ENST00000540798 CCDC32Q9BV29 185 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 ABCB10Q9NRK6 738 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 POU2F3Q9UKI9 436 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 MAU2Q9Y6X3 613 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 V9GYH0 126 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 ANKRD34BA5PLL1 514 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 SLC22A31A6NKX4 558 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 IL33O95760 270 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 CSTAP01040 98 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 PEPDP12955 493 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 CSF2RBP32927 897 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 PPICP45877 212 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 EFNA3P52797 238 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 DNASE1L3Q13609 305 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 NNATQ16517 81 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 ZNF791Q3KP31 576 aaPredicted RBP12.65□□□□□ -0.38
RTN3-210ENST00000540798 SPANXN2Q5MJ10 180 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 SLC35F3Q8IY50 421 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 ACBD7Q8N6N7 88 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 ZNF321PQ8N8H1 164 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 OR51G2Q8NGK0 314 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 OR1L3Q8NH93 324 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 DNAJA4Q8WW22 397 aaPredicted RBP12.65□□□□□ -0.38
RTN3-210ENST00000540798 SLC46A1Q96NT5 459 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 PHOX2BQ99453 314 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 TEAD3Q99594 435 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 TM9SF2Q99805 663 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 HOXD1Q9GZZ0 328 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 TBC1D17Q9HA65 648 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 EXOSC3Q9NQT5 275 aaKnown RBP12.65□□□□□ -0.38
RTN3-210ENST00000540798 CHRNA9Q9UGM1 479 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 OR10H1Q9Y4A9 318 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 TNRC6BQ9UPQ9 1833 aaKnown RBP12.65□□□□□ -0.38
RTN3-210ENST00000540798 HEATR5AQ86XA9 2040 aa12.65□□□□□ -0.38
RTN3-210ENST00000540798 ZC3H12DA2A288 527 aaKnown RBP12.64□□□□□ -0.39
RTN3-210ENST00000540798 TMEM150CB9EJG8 249 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 FAM47E-STBD1D6RA91 191 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 PRR23D1E9PI22 279 aaPredicted RBP12.64□□□□□ -0.39
RTN3-210ENST00000540798 BCAT2O15382 392 aaPredicted RBP12.64□□□□□ -0.39
RTN3-210ENST00000540798 PRR23D2P0DMB1 279 aaPredicted RBP12.64□□□□□ -0.39
RTN3-210ENST00000540798 GLB1P16278 677 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 SLC6A6P31641 620 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 SLC9A3P48764 834 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 NDUFAF6Q330K2 333 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 TTLL10Q6ZVT0 673 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 PLXDC1Q8IUK5 500 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 SLITRK4Q8IW52 837 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 TMEM99Q8N816 258 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 OR51A7Q8NH64 312 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 SLC2A12Q8TD20 617 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 C3orf49Q96BT1 292 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 CPNE5Q9HCH3 593 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 COL6A3P12111 3177 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 GON4LQ3T8J9 2241 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 POLR1CO15160 346 aaPredicted RBP12.64□□□□□ -0.39
RTN3-210ENST00000540798 DUX1O43812 170 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 PPP1R3DO95685 299 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 DDAH2O95865 285 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 CLEC2LP0C7M8 214 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 GPLD1P80108 840 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 CRYZQ08257 329 aaKnown RBP12.64□□□□□ -0.39
RTN3-210ENST00000540798 GALEQ14376 348 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 KCNJ8Q15842 424 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 CRTC2Q53ET0 693 aaPredicted RBP12.64□□□□□ -0.39
RTN3-210ENST00000540798 ARHGAP11AQ6P4F7 1023 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 C7orf57Q8NEG2 295 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 ZNF721Q8TF20 911 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.64□□□□□ -0.39
RTN3-210ENST00000540798 C1GALT1C1Q96EU7 318 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 AHCYL2Q96HN2 611 aaKnown RBP12.64□□□□□ -0.39
RTN3-210ENST00000540798 LMF1Q96S06 567 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 DCLRE1CQ96SD1 692 aaKnown RBP12.64□□□□□ -0.39
RTN3-210ENST00000540798 KATNB1Q9BVA0 655 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 SLC19A3Q9BZV2 496 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 POLE4Q9NR33 117 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 A0A1W2PPC1 479 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 RIIAD1A6NNX1 92 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms