RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 ALG10BQ5I7T1 473 aa17.15■□□□□ 0.34
TNFRSF1A-213ENST00000540022 NKAIN4Q8IVV8 208 aa17.15■□□□□ 0.34
TNFRSF1A-213ENST00000540022 RNF217Q8TC41 542 aa17.15■□□□□ 0.34
TNFRSF1A-213ENST00000540022 TMEM234Q8WY98 164 aa17.15■□□□□ 0.34
TNFRSF1A-213ENST00000540022 CENPNQ96H22 339 aaPredicted RBP17.15■□□□□ 0.34
TNFRSF1A-213ENST00000540022 PRSS27Q9BQR3 290 aa17.15■□□□□ 0.34
TNFRSF1A-213ENST00000540022 BDH2Q9BUT1 245 aa17.15■□□□□ 0.34
TNFRSF1A-213ENST00000540022 ZNF703Q9H7S9 590 aaPredicted RBP17.15■□□□□ 0.34
TNFRSF1A-213ENST00000540022 REEP1Q9H902 201 aa17.15■□□□□ 0.34
TNFRSF1A-213ENST00000540022 PRDM4Q9UKN5 801 aa17.15■□□□□ 0.34
TNFRSF1A-213ENST00000540022 B3GNT3Q9Y2A9 372 aa17.15■□□□□ 0.34
TNFRSF1A-213ENST00000540022 SAMHD1Q9Y3Z3 626 aaKnown RBP17.15■□□□□ 0.34
TNFRSF1A-213ENST00000540022 A0A1W2PRQ8 180 aa17.14■□□□□ 0.33
TNFRSF1A-213ENST00000540022 FAM166BA8MTA8 275 aa17.14■□□□□ 0.33
TNFRSF1A-213ENST00000540022 SHISA8B8ZZ34 492 aa17.14■□□□□ 0.33
TNFRSF1A-213ENST00000540022 TNFRSF11BO00300 401 aa17.14■□□□□ 0.33
TNFRSF1A-213ENST00000540022 ETV2O00321 342 aaPredicted RBP17.14■□□□□ 0.33
TNFRSF1A-213ENST00000540022 CHP2O43745 196 aa17.14■□□□□ 0.33
TNFRSF1A-213ENST00000540022 ZIC3O60481 467 aa17.14■□□□□ 0.33
TNFRSF1A-213ENST00000540022 THRBP10828 461 aa17.14■□□□□ 0.33
TNFRSF1A-213ENST00000540022 GDF1P27539 372 aa17.14■□□□□ 0.33
TNFRSF1A-213ENST00000540022 SRD5A2P31213 254 aa17.14■□□□□ 0.33
TNFRSF1A-213ENST00000540022 LIMS1P48059 325 aa17.14■□□□□ 0.33
TNFRSF1A-213ENST00000540022 HMGA2P52926 109 aa17.14■□□□□ 0.33
TNFRSF1A-213ENST00000540022 DLX5P56178 289 aa17.14■□□□□ 0.33
TNFRSF1A-213ENST00000540022 FOXF1Q12946 379 aa17.14■□□□□ 0.33
TNFRSF1A-213ENST00000540022 DGCR6Q14129 220 aa17.14■□□□□ 0.33
TNFRSF1A-213ENST00000540022 HYAL4Q2M3T9 481 aa17.14■□□□□ 0.33
TNFRSF1A-213ENST00000540022 SLC25A53Q5H9E4 307 aa17.14■□□□□ 0.33
TNFRSF1A-213ENST00000540022 WDR88Q6ZMY6 472 aa17.14■□□□□ 0.33
TNFRSF1A-213ENST00000540022 GRINAQ7Z429 371 aa17.14■□□□□ 0.33
TNFRSF1A-213ENST00000540022 TMEM179BQ7Z7N9 219 aa17.14■□□□□ 0.33
TNFRSF1A-213ENST00000540022 ATG4DQ86TL0 474 aaPredicted RBP17.14■□□□□ 0.33
TNFRSF1A-213ENST00000540022 TMEM251Q8N6I4 163 aa17.14■□□□□ 0.33
TNFRSF1A-213ENST00000540022 OR4C15Q8NGM1 316 aa17.14■□□□□ 0.33
TNFRSF1A-213ENST00000540022 POC1BQ8TC44 478 aa17.14■□□□□ 0.33
TNFRSF1A-213ENST00000540022 DNAJA4Q8WW22 397 aaPredicted RBP17.14■□□□□ 0.33
TNFRSF1A-213ENST00000540022 SLC38A4Q969I6 547 aa17.14■□□□□ 0.33
TNFRSF1A-213ENST00000540022 OSGIN1Q9UJX0 560 aa17.14■□□□□ 0.33
TNFRSF1A-213ENST00000540022 DKKL1Q9UK85 242 aa17.14■□□□□ 0.33
TNFRSF1A-213ENST00000540022 A0A087WZY1 265 aa17.13■□□□□ 0.33
TNFRSF1A-213ENST00000540022 TRBV4-1A0A0J9YWV2 114 aa17.13■□□□□ 0.33
TNFRSF1A-213ENST00000540022 FAM47E-STBD1D6RA91 191 aa17.13■□□□□ 0.33
TNFRSF1A-213ENST00000540022 HK1P19367 917 aa17.13■□□□□ 0.33
TNFRSF1A-213ENST00000540022 SMIM11AP58511 58 aa17.13■□□□□ 0.33
TNFRSF1A-213ENST00000540022 TRAM2Q15035 370 aa17.13■□□□□ 0.33
TNFRSF1A-213ENST00000540022 TOMM20Q15388 145 aa17.13■□□□□ 0.33
TNFRSF1A-213ENST00000540022 PLEKHN1Q494U1 663 aaPredicted RBP17.13■□□□□ 0.33
TNFRSF1A-213ENST00000540022 NADK2Q4G0N4 442 aa17.13■□□□□ 0.33
TNFRSF1A-213ENST00000540022 FGD3Q5JSP0 725 aa17.13■□□□□ 0.33
TNFRSF1A-213ENST00000540022 RNFT1Q5M7Z0 435 aa17.13■□□□□ 0.33
TNFRSF1A-213ENST00000540022 SWT1Q5T5J6 900 aaKnown RBP17.13■□□□□ 0.33
TNFRSF1A-213ENST00000540022 FBXW10Q5XX13 1052 aa17.13■□□□□ 0.33
TNFRSF1A-213ENST00000540022 SLC6A19Q695T7 634 aa17.13■□□□□ 0.33
TNFRSF1A-213ENST00000540022 FAM98AQ8NCA5 519 aaKnown RBP17.13■□□□□ 0.33
TNFRSF1A-213ENST00000540022 SLC7A13Q8TCU3 470 aa17.13■□□□□ 0.33
TNFRSF1A-213ENST00000540022 FUZQ9BT04 418 aa17.13■□□□□ 0.33
TNFRSF1A-213ENST00000540022 C6orf203Q9P0P8 240 aaPredicted RBP17.13■□□□□ 0.33
TNFRSF1A-213ENST00000540022 LUZP4Q9P127 313 aa17.13■□□□□ 0.33
TNFRSF1A-213ENST00000540022 B4GALT7Q9UBV7 327 aa17.13■□□□□ 0.33
TNFRSF1A-213ENST00000540022 RPH3AQ9Y2J0 694 aaPredicted RBP17.13■□□□□ 0.33
TNFRSF1A-213ENST00000540022 E2F6O75461 281 aa17.12■□□□□ 0.33
TNFRSF1A-213ENST00000540022 MAGEA5P43359 124 aa17.12■□□□□ 0.33
TNFRSF1A-213ENST00000540022 PPIAP62937 165 aaKnown RBP17.12■□□□□ 0.33
TNFRSF1A-213ENST00000540022 LSM11P83369 360 aaKnown RBP eCLIP17.12■□□□□ 0.33
TNFRSF1A-213ENST00000540022 MERTKQ12866 999 aa17.12■□□□□ 0.33
TNFRSF1A-213ENST00000540022 LAPTM4AQ15012 233 aa17.12■□□□□ 0.33
TNFRSF1A-213ENST00000540022 EXOC3L2Q2M3D2 409 aa17.12■□□□□ 0.33
TNFRSF1A-213ENST00000540022 POMZP3Q6PJE2 187 aa17.12■□□□□ 0.33
TNFRSF1A-213ENST00000540022 LINC00114Q6XXX2 140 aa17.12■□□□□ 0.33
TNFRSF1A-213ENST00000540022 ADGRG3Q86Y34 549 aa17.12■□□□□ 0.33
TNFRSF1A-213ENST00000540022 FAM83FQ8NEG4 500 aaPredicted RBP17.12■□□□□ 0.33
TNFRSF1A-213ENST00000540022 OR5M1Q8NGP8 315 aa17.12■□□□□ 0.33
TNFRSF1A-213ENST00000540022 TMEM255BQ8WV15 326 aa17.12■□□□□ 0.33
TNFRSF1A-213ENST00000540022 ZBTB8AQ96BR9 441 aa17.12■□□□□ 0.33
TNFRSF1A-213ENST00000540022 MRGPRX4Q96LA9 322 aa17.12■□□□□ 0.33
TNFRSF1A-213ENST00000540022 ALPK1Q96QP1 1244 aa17.12■□□□□ 0.33
TNFRSF1A-213ENST00000540022 EPYCQ99645 322 aa17.12■□□□□ 0.33
TNFRSF1A-213ENST00000540022 BARD1Q99728 777 aaKnown RBP17.12■□□□□ 0.33
TNFRSF1A-213ENST00000540022 ANKRD19PQ9H560 264 aa17.12■□□□□ 0.33
TNFRSF1A-213ENST00000540022 SELENONQ9NZV5 590 aa17.12■□□□□ 0.33
TNFRSF1A-213ENST00000540022 CNTRLQ7Z7A1 2325 aa17.12■□□□□ 0.33
TNFRSF1A-213ENST00000540022 TENM4Q6N022 2769 aa17.12■□□□□ 0.33
TNFRSF1A-213ENST00000540022 A0A087WUJ7 227 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 A0A087WUU8 490 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 TRAPPC6AO75865 159 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 RASAL1O95294 804 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 CELA3AP09093 270 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 PTNP21246 168 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 DNAJA1P31689 397 aaKnown RBP17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 POLR2HP52434 150 aaKnown RBP17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 SLC34A1Q06495 639 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 SEC23BQ15437 767 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 TMEM44Q2T9K0 475 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 PODNL1Q6PEZ8 512 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 TBPL2Q6SJ96 375 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 PRICKLE2Q7Z3G6 844 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 YRDCQ86U90 279 aaKnown RBP17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 SLC22A16Q86VW1 577 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 HS3ST5Q8IZT8 346 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms