RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 ARPC3O15145 178 aa13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 AKAP8O43823 692 aaKnown RBP13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 TSPAN2O60636 221 aa13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 GPX5O75715 221 aa13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 OR7A10O76100 309 aa13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 LIMS3P0CW19 117 aa13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 LIMS4P0CW20 117 aa13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 FUT1P19526 365 aa13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 NOS3P29474 1203 aa13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 GRK6P43250 576 aa13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 CRYBB2P43320 205 aa13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 RNF144AP50876 292 aaPredicted RBP13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 DCDP81605 110 aaKnown RBP13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 ZNF45Q02386 682 aa13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 SKP2Q13309 424 aa13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 TRA2AQ13595 282 aaKnown RBP eCLIP13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 NNATQ16517 81 aa13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 ELOA3BQ3SY89 546 aa13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 NIPAL3Q6P499 406 aa13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 GUSBP11Q6P575 273 aa13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 C1orf210Q8IVY1 113 aa13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 ACBD7Q8N6N7 88 aa13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 MINDY2Q8NBR6 621 aa13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 GALNT6Q8NCL4 622 aa13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 ELOA3Q8NG57 546 aa13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 OR51A7Q8NH64 312 aa13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 PHOSPHO1Q8TCT1 267 aa13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 TNFRSF13CQ96RJ3 184 aa13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 WWTR1Q9GZV5 400 aa13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 GAREM1Q9H706 876 aa13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 ERVK13-1Q9NX77 482 aa13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 FBXO4Q9UKT5 387 aa13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 GSTK1Q9Y2Q3 226 aa13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 SLC6A5Q9Y345 797 aa13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 U3KQA8 63 aa13.55□□□□□ -0.24
ECHDC1-220ENST00000528402 ALG1L2C9J202 215 aa13.54□□□□□ -0.24
ECHDC1-220ENST00000528402 J3QRE1 110 aa13.54□□□□□ -0.24
ECHDC1-220ENST00000528402 ADAM11O75078 769 aa13.54□□□□□ -0.24
ECHDC1-220ENST00000528402 RFPL3O75679 317 aa13.54□□□□□ -0.24
ECHDC1-220ENST00000528402 SYPP08247 313 aa13.54□□□□□ -0.24
ECHDC1-220ENST00000528402 MYF5P13349 255 aa13.54□□□□□ -0.24
ECHDC1-220ENST00000528402 CD53P19397 219 aa13.54□□□□□ -0.24
ECHDC1-220ENST00000528402 GABRA5P31644 462 aa13.54□□□□□ -0.24
ECHDC1-220ENST00000528402 RORCP51449 518 aa13.54□□□□□ -0.24
ECHDC1-220ENST00000528402 PPP5CP53041 499 aa13.54□□□□□ -0.24
ECHDC1-220ENST00000528402 LGALS3BPQ08380 585 aa13.54□□□□□ -0.24
ECHDC1-220ENST00000528402 ITGADQ13349 1161 aa13.54□□□□□ -0.24
ECHDC1-220ENST00000528402 INAQ16352 499 aa13.54□□□□□ -0.24
ECHDC1-220ENST00000528402 NKAIN1Q4KMZ8 207 aa13.54□□□□□ -0.24
ECHDC1-220ENST00000528402 PERM1Q5SV97 790 aa13.54□□□□□ -0.24
ECHDC1-220ENST00000528402 C1orf189Q5VU69 101 aa13.54□□□□□ -0.24
ECHDC1-220ENST00000528402 PLBD1Q6P4A8 553 aa13.54□□□□□ -0.24
ECHDC1-220ENST00000528402 ATG4DQ86TL0 474 aaPredicted RBP13.54□□□□□ -0.24
ECHDC1-220ENST00000528402 MISPQ8IVT2 679 aa13.54□□□□□ -0.24
ECHDC1-220ENST00000528402 ZNF441Q8N8Z8 693 aa13.54□□□□□ -0.24
ECHDC1-220ENST00000528402 SLC37A3Q8NCC5 494 aa13.54□□□□□ -0.24
ECHDC1-220ENST00000528402 ZNF485Q8NCK3 441 aa13.54□□□□□ -0.24
ECHDC1-220ENST00000528402 STT3BQ8TCJ2 826 aa13.54□□□□□ -0.24
ECHDC1-220ENST00000528402 SECISBP2Q96T21 854 aaKnown RBP13.54□□□□□ -0.24
ECHDC1-220ENST00000528402 MED18Q9BUE0 208 aa13.54□□□□□ -0.24
ECHDC1-220ENST00000528402 ASPNQ9BXN1 380 aa13.54□□□□□ -0.24
ECHDC1-220ENST00000528402 MCCC2Q9HCC0 563 aa13.54□□□□□ -0.24
ECHDC1-220ENST00000528402 EXOSC4Q9NPD3 245 aaKnown RBP13.54□□□□□ -0.24
ECHDC1-220ENST00000528402 PPIEQ9UNP9 301 aaKnown RBP13.54□□□□□ -0.24
ECHDC1-220ENST00000528402 PCDHGB7Q9Y5F8 929 aa13.54□□□□□ -0.24
ECHDC1-220ENST00000528402 SPIN1Q9Y657 262 aaPredicted RBP13.54□□□□□ -0.24
ECHDC1-220ENST00000528402 ASXL3Q9C0F0 2248 aa13.53□□□□□ -0.24
ECHDC1-220ENST00000528402 IGHV5-10-1A0A0J9YXX1 117 aa13.53□□□□□ -0.24
ECHDC1-220ENST00000528402 A0A1W2PQM1 296 aa13.53□□□□□ -0.24
ECHDC1-220ENST00000528402 IMPA2O14732 288 aa13.53□□□□□ -0.24
ECHDC1-220ENST00000528402 SLC2A10O95528 541 aa13.53□□□□□ -0.24
ECHDC1-220ENST00000528402 IL1AP01583 271 aa13.53□□□□□ -0.24
ECHDC1-220ENST00000528402 CFIP05156 583 aa13.53□□□□□ -0.24
ECHDC1-220ENST00000528402 HEXBP07686 556 aa13.53□□□□□ -0.24
ECHDC1-220ENST00000528402 APEHP13798 732 aaKnown RBP13.53□□□□□ -0.24
ECHDC1-220ENST00000528402 FGF9P31371 208 aaPredicted RBP13.53□□□□□ -0.24
ECHDC1-220ENST00000528402 SOX3P41225 446 aa13.53□□□□□ -0.24
ECHDC1-220ENST00000528402 NR0B1P51843 470 aaKnown RBP13.53□□□□□ -0.24
ECHDC1-220ENST00000528402 NRG3P56975 720 aa13.53□□□□□ -0.24
ECHDC1-220ENST00000528402 ACTC1P68032 377 aa13.53□□□□□ -0.24
ECHDC1-220ENST00000528402 ACTA1P68133 377 aa13.53□□□□□ -0.24
ECHDC1-220ENST00000528402 PLCXD2Q0VAA5 305 aa13.53□□□□□ -0.24
ECHDC1-220ENST00000528402 EFR3AQ14156 821 aa13.53□□□□□ -0.24
ECHDC1-220ENST00000528402 IL11RAQ14626 422 aa13.53□□□□□ -0.24
ECHDC1-220ENST00000528402 RGS21Q2M5E4 152 aa13.53□□□□□ -0.24
ECHDC1-220ENST00000528402 PRAMEF17Q5VTA0 474 aa13.53□□□□□ -0.24
ECHDC1-220ENST00000528402 LIPKQ5VXJ0 399 aa13.53□□□□□ -0.24
ECHDC1-220ENST00000528402 THSD4Q6ZMP0 1018 aa13.53□□□□□ -0.24
ECHDC1-220ENST00000528402 Q6ZNX1 250 aa13.53□□□□□ -0.24
ECHDC1-220ENST00000528402 COX15Q7KZN9 410 aa13.53□□□□□ -0.24
ECHDC1-220ENST00000528402 OVCH1Q7RTY7 1134 aa13.53□□□□□ -0.24
ECHDC1-220ENST00000528402 C9orf40Q8IXQ3 194 aa13.53□□□□□ -0.24
ECHDC1-220ENST00000528402 GPALPP1Q8IXQ4 340 aa13.53□□□□□ -0.24
ECHDC1-220ENST00000528402 ZNF321PQ8N8H1 164 aa13.53□□□□□ -0.24
ECHDC1-220ENST00000528402 OR8K3Q8NH51 312 aa13.53□□□□□ -0.24
ECHDC1-220ENST00000528402 METTL21AQ8WXB1 218 aa13.53□□□□□ -0.24
ECHDC1-220ENST00000528402 PTP4A1Q93096 173 aa13.53□□□□□ -0.24
ECHDC1-220ENST00000528402 PPP1R14BQ96C90 147 aa13.53□□□□□ -0.24
ECHDC1-220ENST00000528402 OR6C1Q96RD1 312 aa13.53□□□□□ -0.24
ECHDC1-220ENST00000528402 GAL3ST4Q96RP7 486 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms