RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 TFAP2EQ6VUC0 442 aa9.48□□□□□ -0.89
CD44-227ENST00000528086 ZNF836Q6ZNA1 936 aa9.48□□□□□ -0.89
CD44-227ENST00000528086 RETREG3Q86VR2 466 aa9.48□□□□□ -0.89
CD44-227ENST00000528086 KRTAP1-3Q8IUG1 177 aa9.48□□□□□ -0.89
CD44-227ENST00000528086 GABRG1Q8N1C3 465 aa9.48□□□□□ -0.89
CD44-227ENST00000528086 TMCO5AQ8N6Q1 288 aa9.48□□□□□ -0.89
CD44-227ENST00000528086 OIT3Q8WWZ8 545 aa9.48□□□□□ -0.89
CD44-227ENST00000528086 TMEM19Q96HH6 336 aa9.48□□□□□ -0.89
CD44-227ENST00000528086 ITCHQ96J02 903 aa9.48□□□□□ -0.89
CD44-227ENST00000528086 MAGEB18Q96M61 343 aa9.48□□□□□ -0.89
CD44-227ENST00000528086 ZNF300Q96RE9 604 aaPredicted RBP9.48□□□□□ -0.89
CD44-227ENST00000528086 ZBTB18Q99592 522 aa9.48□□□□□ -0.89
CD44-227ENST00000528086 PSD2Q9BQI7 771 aa9.48□□□□□ -0.89
CD44-227ENST00000528086 WFDC6Q9BQY6 131 aa9.48□□□□□ -0.89
CD44-227ENST00000528086 ADAM19Q9H013 955 aa9.48□□□□□ -0.89
CD44-227ENST00000528086 CXXC4Q9H2H0 198 aa9.48□□□□□ -0.89
CD44-227ENST00000528086 MTHFD2LQ9H903 347 aaPredicted RBP9.48□□□□□ -0.89
CD44-227ENST00000528086 SLC24A3Q9HC58 644 aa9.48□□□□□ -0.89
CD44-227ENST00000528086 HHATLQ9HCP6 504 aa9.48□□□□□ -0.89
CD44-227ENST00000528086 C6orf203Q9P0P8 240 aaPredicted RBP9.48□□□□□ -0.89
CD44-227ENST00000528086 ST6GALNAC2Q9UJ37 374 aa9.48□□□□□ -0.89
CD44-227ENST00000528086 LIPT1Q9Y234 373 aa9.48□□□□□ -0.89
CD44-227ENST00000528086 SLC35A3Q9Y2D2 325 aa9.48□□□□□ -0.89
CD44-227ENST00000528086 PLEKHA6Q9Y2H5 1048 aa9.48□□□□□ -0.89
CD44-227ENST00000528086 GMEB1Q9Y692 573 aa9.48□□□□□ -0.89
CD44-227ENST00000528086 ARID1AO14497 2285 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 A0A096LPI6 279 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 TMEM72A0PK05 275 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 CDHR4A6H8M9 788 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 ENO4A6NNW6 628 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 ZNF716A6NP11 495 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 KLF4O43474 513 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 CYTIPO60759 359 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 ATE1O95260 518 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 KRT75O95678 551 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 GKN3PP0CG01 181 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 NR2F1P10589 423 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 IMPDH2P12268 514 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 FCGR2AP12318 317 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 POU2F1P14859 743 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 PGCP20142 388 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 PEX19P40855 299 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 IDH2P48735 452 aaKnown RBP9.47□□□□□ -0.89
CD44-227ENST00000528086 DSTNP60981 165 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 LRRC74AQ0VAA2 488 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 EPS8Q12929 822 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 SELPLGQ14242 412 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 TSC22D1Q15714 1073 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 SPNS3Q6ZMD2 512 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 TMPPEQ6ZT21 453 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 FCRLAQ7L513 359 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.47□□□□□ -0.89
CD44-227ENST00000528086 ATG4DQ86TL0 474 aaPredicted RBP9.47□□□□□ -0.89
CD44-227ENST00000528086 TRIML2Q8N7C3 387 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 STON2Q8WXE9 905 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 ZNF775Q96BV0 537 aaPredicted RBP9.47□□□□□ -0.89
CD44-227ENST00000528086 SPDL1Q96EA4 605 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 OR5B2Q96R09 309 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 C12orf49Q9H741 205 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 BCO1Q9HAY6 547 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.47□□□□□ -0.89
CD44-227ENST00000528086 CCM2LQ9NUG4 571 aaPredicted RBP9.47□□□□□ -0.89
CD44-227ENST00000528086 ELOVL5Q9NYP7 299 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 CCDC167Q9P0B6 97 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 KLHL13Q9P2N7 655 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 OSGIN1Q9UJX0 560 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 MCTS1Q9ULC4 181 aaKnown RBP9.47□□□□□ -0.89
CD44-227ENST00000528086 PROCRQ9UNN8 238 aa9.47□□□□□ -0.89
CD44-227ENST00000528086 C16orf97H3BN30 126 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 CLIC1O00299 241 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 NR5A2O00482 541 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 FAAHO00519 579 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 POLR3GO15318 223 aaPredicted RBP9.46□□□□□ -0.9
CD44-227ENST00000528086 FRS3O43559 492 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 TPST1O60507 370 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 SYNGR4O95473 234 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 BCHEP06276 602 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 FESP07332 822 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 CRYGSP22914 178 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 ME2P23368 584 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 CRATP43155 626 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 MAGEA8P43361 318 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 DIO1P49895 249 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 ATP4BP51164 291 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 FOXG1P55316 489 aaPredicted RBP9.46□□□□□ -0.9
CD44-227ENST00000528086 TXNL4AP83876 142 aaKnown RBP9.46□□□□□ -0.9
CD44-227ENST00000528086 H3F3AP84243 136 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 EXOC3L2Q2M3D2 409 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 GLIPR1L2Q4G1C9 344 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 SYT14P1Q58G82 188 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 C6orf10Q5SRN2 563 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 ABLIM2Q6H8Q1 611 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 PPP4R4Q6NUP7 873 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 C3orf33Q6P1S2 294 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 PAMR1Q6UXH9 720 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 GRINAQ7Z429 371 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 CCDC103Q8IW40 242 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 CMIPQ8IY22 773 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 ARFGAP2Q8N6H7 521 aa9.46□□□□□ -0.9
CD44-227ENST00000528086 OR52P1PQ8NH57 321 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms