RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 OR5B2Q96R09 309 aa18.41■□□□□ 0.54
VPS28-206ENST00000526734 EBF4Q9BQW3 602 aa18.41■□□□□ 0.54
VPS28-206ENST00000526734 MED18Q9BUE0 208 aa18.41■□□□□ 0.54
VPS28-206ENST00000526734 CCDC106Q9BWC9 280 aa18.41■□□□□ 0.54
VPS28-206ENST00000526734 QRSL1Q9H0R6 528 aaKnown RBP18.41■□□□□ 0.54
VPS28-206ENST00000526734 CHRNA9Q9UGM1 479 aa18.41■□□□□ 0.54
VPS28-206ENST00000526734 DNPH1O43598 174 aa18.4■□□□□ 0.54
VPS28-206ENST00000526734 C1QCP02747 245 aa18.4■□□□□ 0.54
VPS28-206ENST00000526734 HRGP04196 525 aa18.4■□□□□ 0.54
VPS28-206ENST00000526734 ETFAP13804 333 aa18.4■□□□□ 0.54
VPS28-206ENST00000526734 CD1EP15812 388 aa18.4■□□□□ 0.54
VPS28-206ENST00000526734 ENPP1P22413 925 aa18.4■□□□□ 0.54
VPS28-206ENST00000526734 RYKP34925 604 aa18.4■□□□□ 0.54
VPS28-206ENST00000526734 SQLEQ14534 574 aa18.4■□□□□ 0.54
VPS28-206ENST00000526734 TESK1Q15569 626 aa18.4■□□□□ 0.54
VPS28-206ENST00000526734 SPNS3Q6ZMD2 512 aa18.4■□□□□ 0.54
VPS28-206ENST00000526734 ABHD3Q8WU67 409 aa18.4■□□□□ 0.54
VPS28-206ENST00000526734 ROBO4Q8WZ75 1007 aa18.4■□□□□ 0.54
VPS28-206ENST00000526734 SPDL1Q96EA4 605 aa18.4■□□□□ 0.54
VPS28-206ENST00000526734 ZHX1-C8orf76Q96EF9 292 aa18.4■□□□□ 0.54
VPS28-206ENST00000526734 PAIP1Q9H074 479 aaKnown RBP18.4■□□□□ 0.54
VPS28-206ENST00000526734 ARMC7Q9H6L4 198 aa18.4■□□□□ 0.54
VPS28-206ENST00000526734 ST6GALNAC2Q9UJ37 374 aa18.4■□□□□ 0.54
VPS28-206ENST00000526734 HDGFL3Q9Y3E1 203 aa18.4■□□□□ 0.54
VPS28-206ENST00000526734 A0A0G2JPF8 293 aa18.39■□□□□ 0.53
VPS28-206ENST00000526734 HNRNPCL2B2RXH8 293 aa18.39■□□□□ 0.53
VPS28-206ENST00000526734 HNRNPCL3B7ZW38 293 aa18.39■□□□□ 0.53
VPS28-206ENST00000526734 CLIC1O00299 241 aa18.39■□□□□ 0.53
VPS28-206ENST00000526734 HNRNPCL1O60812 293 aaKnown RBP18.39■□□□□ 0.53
VPS28-206ENST00000526734 BCHEP06276 602 aa18.39■□□□□ 0.53
VPS28-206ENST00000526734 THBS1P07996 1170 aa18.39■□□□□ 0.53
VPS28-206ENST00000526734 TFPTP0C1Z6 253 aa18.39■□□□□ 0.53
VPS28-206ENST00000526734 HNRNPCL4P0DMR1 293 aa18.39■□□□□ 0.53
VPS28-206ENST00000526734 BMP2P12643 396 aa18.39■□□□□ 0.53
VPS28-206ENST00000526734 DNASE1P24855 282 aa18.39■□□□□ 0.53
VPS28-206ENST00000526734 CCKARP32238 428 aa18.39■□□□□ 0.53
VPS28-206ENST00000526734 PLAURQ03405 335 aa18.39■□□□□ 0.53
VPS28-206ENST00000526734 LARS2Q15031 903 aaKnown RBP18.39■□□□□ 0.53
VPS28-206ENST00000526734 GTDC1Q4AE62 458 aa18.39■□□□□ 0.53
VPS28-206ENST00000526734 LRIF1Q5T3J3 769 aa18.39■□□□□ 0.53
VPS28-206ENST00000526734 MRPL2Q5T653 305 aaKnown RBP18.39■□□□□ 0.53
VPS28-206ENST00000526734 RNF220Q5VTB9 566 aa18.39■□□□□ 0.53
VPS28-206ENST00000526734 SLC2A7Q6PXP3 512 aa18.39■□□□□ 0.53
VPS28-206ENST00000526734 TMPPEQ6ZT21 453 aa18.39■□□□□ 0.53
VPS28-206ENST00000526734 CNOT9Q92600 299 aaKnown RBP18.39■□□□□ 0.53
VPS28-206ENST00000526734 BCO1Q9HAY6 547 aa18.39■□□□□ 0.53
VPS28-206ENST00000526734 CCDC167Q9P0B6 97 aa18.39■□□□□ 0.53
VPS28-206ENST00000526734 TRIM33Q9UPN9 1127 aa18.39■□□□□ 0.53
VPS28-206ENST00000526734 PCDHB14Q9Y5E9 798 aa18.39■□□□□ 0.53
VPS28-206ENST00000526734 GMEB1Q9Y692 573 aa18.39■□□□□ 0.53
VPS28-206ENST00000526734 SPG11Q96JI7 2443 aa18.38■□□□□ 0.53
VPS28-206ENST00000526734 A0A1W2PNR3 127 aa18.38■□□□□ 0.53
VPS28-206ENST00000526734 CFAP73A6NFT4 308 aa18.38■□□□□ 0.53
VPS28-206ENST00000526734 CLDN24A6NM45 220 aa18.38■□□□□ 0.53
VPS28-206ENST00000526734 BCAS1O75363 584 aaPredicted RBP18.38■□□□□ 0.53
VPS28-206ENST00000526734 YES1P07947 543 aa18.38■□□□□ 0.53
VPS28-206ENST00000526734 CRYGSP22914 178 aa18.38■□□□□ 0.53
VPS28-206ENST00000526734 IDH2P48735 452 aaKnown RBP18.38■□□□□ 0.53
VPS28-206ENST00000526734 DIO1P49895 249 aa18.38■□□□□ 0.53
VPS28-206ENST00000526734 RGNQ15493 299 aa18.38■□□□□ 0.53
VPS28-206ENST00000526734 MAPK11Q15759 364 aa18.38■□□□□ 0.53
VPS28-206ENST00000526734 EXOC3L2Q2M3D2 409 aa18.38■□□□□ 0.53
VPS28-206ENST00000526734 PAMR1Q6UXH9 720 aa18.38■□□□□ 0.53
VPS28-206ENST00000526734 FUNDC1Q8IVP5 155 aa18.38■□□□□ 0.53
VPS28-206ENST00000526734 OR52P1PQ8NH57 321 aa18.38■□□□□ 0.53
VPS28-206ENST00000526734 SLC38A5Q8WUX1 472 aa18.38■□□□□ 0.53
VPS28-206ENST00000526734 AURKBQ96GD4 344 aaPredicted RBP18.38■□□□□ 0.53
VPS28-206ENST00000526734 WFIKKN1Q96NZ8 548 aa18.38■□□□□ 0.53
VPS28-206ENST00000526734 A4GALTQ9NPC4 353 aa18.38■□□□□ 0.53
VPS28-206ENST00000526734 CTPS2Q9NRF8 586 aa18.38■□□□□ 0.53
VPS28-206ENST00000526734 KLHL28Q9NXS3 571 aa18.38■□□□□ 0.53
VPS28-206ENST00000526734 ZNF232Q9UNY5 417 aa18.38■□□□□ 0.53
VPS28-206ENST00000526734 CORO2BQ9UQ03 480 aa18.38■□□□□ 0.53
VPS28-206ENST00000526734 GPR52Q9Y2T5 361 aa18.38■□□□□ 0.53
VPS28-206ENST00000526734 IFT52Q9Y366 437 aa18.38■□□□□ 0.53
VPS28-206ENST00000526734 CSMD1Q96PZ7 3565 aa18.37■□□□□ 0.53
VPS28-206ENST00000526734 CDHR4A6H8M9 788 aa18.37■□□□□ 0.53
VPS28-206ENST00000526734 SULT2B1O00204 365 aa18.37■□□□□ 0.53
VPS28-206ENST00000526734 NR5A2O00482 541 aa18.37■□□□□ 0.53
VPS28-206ENST00000526734 ZNF208O43345 1280 aa18.37■□□□□ 0.53
VPS28-206ENST00000526734 CYTIPO60759 359 aa18.37■□□□□ 0.53
VPS28-206ENST00000526734 EDF1O60869 148 aaKnown RBP18.37■□□□□ 0.53
VPS28-206ENST00000526734 PMS2P2O95744 297 aa18.37■□□□□ 0.53
VPS28-206ENST00000526734 TFPIP10646 304 aa18.37■□□□□ 0.53
VPS28-206ENST00000526734 HOXB9P17482 250 aaPredicted RBP18.37■□□□□ 0.53
VPS28-206ENST00000526734 PSMB1P20618 241 aaKnown RBP18.37■□□□□ 0.53
VPS28-206ENST00000526734 SLC1A3P43003 542 aa18.37■□□□□ 0.53
VPS28-206ENST00000526734 POLR2HP52434 150 aaKnown RBP18.37■□□□□ 0.53
VPS28-206ENST00000526734 EPS8Q12929 822 aa18.37■□□□□ 0.53
VPS28-206ENST00000526734 PDK3Q15120 406 aa18.37■□□□□ 0.53
VPS28-206ENST00000526734 ZNF550Q7Z398 422 aa18.37■□□□□ 0.53
VPS28-206ENST00000526734 HMGN2P46Q86SG4 172 aa18.37■□□□□ 0.53
VPS28-206ENST00000526734 BBS10Q8TAM1 723 aa18.37■□□□□ 0.53
VPS28-206ENST00000526734 SLC35B4Q969S0 331 aa18.37■□□□□ 0.53
VPS28-206ENST00000526734 TMEM19Q96HH6 336 aa18.37■□□□□ 0.53
VPS28-206ENST00000526734 FOXC2Q99958 501 aa18.37■□□□□ 0.53
VPS28-206ENST00000526734 USB1Q9BQ65 265 aaKnown RBP18.37■□□□□ 0.53
VPS28-206ENST00000526734 PSD2Q9BQI7 771 aa18.37■□□□□ 0.53
VPS28-206ENST00000526734 HDHD5Q9BXW7 423 aa18.37■□□□□ 0.53
VPS28-206ENST00000526734 KLHL4Q9C0H6 718 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms