RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 SLC38A6Q8IZM9 456 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 OR56B2PQ8NGI1 322 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 CNIH3Q8TBE1 160 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 FBXO32Q969P5 355 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 NT5C3BQ969T7 300 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 TMEM80Q96HE8 168 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 VSIG2Q96IQ7 327 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 RPRD1AQ96P16 312 aaPredicted RBP3.26□□□□□ -1.89
CD44-223ENST00000526553 NPAS2Q99743 824 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 HCAR1Q9BXC0 346 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 PPDPFQ9H3Y8 114 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 SGK2Q9HBY8 427 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 ADAM22Q9P0K1 906 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 ZNF221Q9UK13 617 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 SAMD4AQ9UPU9 718 aaKnown RBP3.26□□□□□ -1.89
CD44-223ENST00000526553 ALG6Q9Y672 507 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 BCORL1Q5H9F3 1711 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 PTPRMP28827 1452 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 ADAMTSL3P82987 1691 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 MADDQ8WXG6 1647 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 PCF11O94913 1555 aaKnown RBP3.25□□□□□ -1.89
CD44-223ENST00000526553 UHRF1BP1LA0JNW5 1464 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 FRG2CA6NGY1 282 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 B4DXG7 233 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 TAPBPO15533 448 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 FCMRO60667 390 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 F10P00742 488 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 NCF2P19878 526 aaPredicted RBP3.25□□□□□ -1.89
CD44-223ENST00000526553 ACVR1BP36896 505 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 XCR1P46094 333 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 OR1D4P47884 311 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 ALDH3B2P48448 385 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 CCT3P49368 545 aaKnown RBP3.25□□□□□ -1.89
CD44-223ENST00000526553 EFNA3P52797 238 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 CDH4P55283 916 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 ACTR3P61158 418 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 ASAH1Q13510 395 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 IDI1Q13907 227 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 CAPRIN1Q14444 709 aaKnown RBP3.25□□□□□ -1.89
CD44-223ENST00000526553 MXD4Q14582 209 aaPredicted RBP3.25□□□□□ -1.89
CD44-223ENST00000526553 SSX2Q16385 188 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 DPYSL2Q16555 572 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 SLC5A12Q1EHB4 618 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 METTL11BQ5VVY1 283 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 TRPM8Q7Z2W7 1104 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 NBPF5PQ86XG9 351 aaPredicted RBP3.25□□□□□ -1.89
CD44-223ENST00000526553 FBXO16Q8IX29 292 aaPredicted RBP3.25□□□□□ -1.89
CD44-223ENST00000526553 CDH26Q8IXH8 852 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 TMEM123Q8N131 208 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 CLEC4FQ8N1N0 589 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 NECAB1Q8N987 351 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 OR5D13Q8NGL4 314 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 OR13F1Q8NGS4 319 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 OR1F12Q8NHA8 337 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 M1APQ8TC57 530 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 FAM122AQ96E09 287 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 NUS1Q96E22 293 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 PELI1Q96FA3 418 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 OR5B2Q96R09 309 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 NPY6RQ99463 290 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 PARD6BQ9BYG5 372 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 LRRN3Q9H3W5 708 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 ASB8Q9H765 288 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 MEPEQ9NQ76 525 aaPredicted RBP3.25□□□□□ -1.89
CD44-223ENST00000526553 NUDT15Q9NV35 164 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 WRAP73Q9P2S5 460 aaPredicted RBP3.25□□□□□ -1.89
CD44-223ENST00000526553 DPM3Q9P2X0 92 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 LCMT1Q9UIC8 334 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 PIGLQ9Y2B2 252 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 KIF27Q86VH2 1401 aa3.25□□□□□ -1.89
CD44-223ENST00000526553 KDM5BQ9UGL1 1544 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 WDR7Q9Y4E6 1490 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 IGHV2-70DA0A0C4DH43 119 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 G3V3Y1 287 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 SLC17A2O00624 439 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 EFNA2O43921 213 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 ECI2O75521 394 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 NDUFB10O96000 172 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 KRT6AP02538 564 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 CD55P08174 381 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 POU2F1P14859 743 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 GCFC2P16383 781 aaKnown RBP3.24□□□□□ -1.89
CD44-223ENST00000526553 MGMTP16455 207 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 MX1P20591 662 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 IMPDH1P20839 514 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 EPS15P42566 896 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 P2RY1P47900 373 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 TDO2P48775 406 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 ZNF154Q13106 437 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 ELAVL3Q14576 367 aaKnown RBP3.24□□□□□ -1.89
CD44-223ENST00000526553 LAGE3Q14657 143 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 C2orf83Q53S99 150 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 SFT2D3Q587I9 215 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 PHYHD1Q5SRE7 291 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 SLC22A10Q63ZE4 541 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 KCNIP4Q6PIL6 250 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 PRSS48Q7RTY5 328 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 SERPINA9Q86WD7 417 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 OR9A4Q8NGU2 314 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 LINC01006Q8NI28 216 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms