RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 ICAM5Q9UMF0 924 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 ZNF232Q9UNY5 417 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 VDAC3Q9Y277 283 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 RPH3AQ9Y2J0 694 aaPredicted RBP9.14□□□□□ -0.95
VPS28-204ENST00000526054 IFT52Q9Y366 437 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 C7orf72A4D263 438 aa9.13□□□□□ -0.95
VPS28-204ENST00000526054 MBD3L4A6NDZ8 208 aaPredicted RBP9.13□□□□□ -0.95
VPS28-204ENST00000526054 MBD3L3A6NE82 208 aaPredicted RBP9.13□□□□□ -0.95
VPS28-204ENST00000526054 MBD3L5A6NJ08 208 aaPredicted RBP9.13□□□□□ -0.95
VPS28-204ENST00000526054 CD8B2A6NJW9 211 aa9.13□□□□□ -0.95
VPS28-204ENST00000526054 OIP5O43482 229 aa9.13□□□□□ -0.95
VPS28-204ENST00000526054 ZIC3O60481 467 aa9.13□□□□□ -0.95
VPS28-204ENST00000526054 SERPINB7O75635 380 aa9.13□□□□□ -0.95
VPS28-204ENST00000526054 PABPC4LP0CB38 370 aaKnown RBP9.13□□□□□ -0.95
VPS28-204ENST00000526054 UQCRBP14927 111 aa9.13□□□□□ -0.95
VPS28-204ENST00000526054 PGCP20142 388 aa9.13□□□□□ -0.95
VPS28-204ENST00000526054 CHMP24386 653 aa9.13□□□□□ -0.95
VPS28-204ENST00000526054 PCGF2P35227 344 aa9.13□□□□□ -0.95
VPS28-204ENST00000526054 OPRM1P35372 400 aa9.13□□□□□ -0.95
VPS28-204ENST00000526054 EIF1P41567 113 aaKnown RBP9.13□□□□□ -0.95
VPS28-204ENST00000526054 AGFG1P52594 562 aaKnown RBP9.13□□□□□ -0.95
VPS28-204ENST00000526054 GFRA1P56159 465 aa9.13□□□□□ -0.95
VPS28-204ENST00000526054 SORDQ00796 357 aa9.13□□□□□ -0.95
VPS28-204ENST00000526054 FOXD4Q12950 439 aaPredicted RBP9.13□□□□□ -0.95
VPS28-204ENST00000526054 ADRM1Q16186 407 aa9.13□□□□□ -0.95
VPS28-204ENST00000526054 PLPPR5Q32ZL2 321 aa9.13□□□□□ -0.95
VPS28-204ENST00000526054 ZNF311Q5JNZ3 666 aa9.13□□□□□ -0.95
VPS28-204ENST00000526054 MRPL2Q5T653 305 aaKnown RBP9.13□□□□□ -0.95
VPS28-204ENST00000526054 INTS11Q5TA45 600 aaKnown RBP9.13□□□□□ -0.95
VPS28-204ENST00000526054 RNF220Q5VTB9 566 aa9.13□□□□□ -0.95
VPS28-204ENST00000526054 POMZP3Q6PJE2 187 aa9.13□□□□□ -0.95
VPS28-204ENST00000526054 CBLN3Q6UW01 205 aa9.13□□□□□ -0.95
VPS28-204ENST00000526054 C6orf89Q6UWU4 347 aa9.13□□□□□ -0.95
VPS28-204ENST00000526054 ZNF836Q6ZNA1 936 aa9.13□□□□□ -0.95
VPS28-204ENST00000526054 ZNF771Q7L3S4 317 aaPredicted RBP9.13□□□□□ -0.95
VPS28-204ENST00000526054 PTOV1Q86YD1 416 aa9.13□□□□□ -0.95
VPS28-204ENST00000526054 ZNF440Q8IYI8 595 aa9.13□□□□□ -0.95
VPS28-204ENST00000526054 FAM71CQ8NEG0 241 aa9.13□□□□□ -0.95
VPS28-204ENST00000526054 MBD3L2Q8NHZ7 208 aaPredicted RBP9.13□□□□□ -0.95
VPS28-204ENST00000526054 ZG16BQ96DA0 208 aa9.13□□□□□ -0.95
VPS28-204ENST00000526054 WDYHV1Q96HA8 205 aa9.13□□□□□ -0.95
VPS28-204ENST00000526054 REXO5Q96IC2 774 aaKnown RBP9.13□□□□□ -0.95
VPS28-204ENST00000526054 STOML1Q9UBI4 398 aa9.13□□□□□ -0.95
VPS28-204ENST00000526054 ZNF443Q9Y2A4 671 aaPredicted RBP9.13□□□□□ -0.95
VPS28-204ENST00000526054 GPC6Q9Y625 555 aaPredicted RBP9.13□□□□□ -0.95
VPS28-204ENST00000526054 ABCA4P78363 2273 aa9.13□□□□□ -0.95
VPS28-204ENST00000526054 DNHD1Q96M86 4753 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 OR2M5A3KFT3 312 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 PRORSD1PA6NEY8 169 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 ERICH4A6NGS2 130 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 CLDN24A6NM45 220 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 FAM220BPB1ANY3 271 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 H0Y3Z8 333 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 RAF1P04049 648 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 TMIGD3P0DMS9 266 aaPredicted RBP9.12□□□□□ -0.95
VPS28-204ENST00000526054 PEPDP12955 493 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 CTSSP25774 331 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 AQP1P29972 269 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 PRKAR1BP31321 381 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 CPA2P48052 419 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 MNAT1P51948 309 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 B3GALT5-AS1P59052 145 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 FOXF1Q12946 379 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 KEAP1Q14145 624 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 KRT72Q14CN4 511 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 DAZAP2Q15038 168 aaPredicted RBP9.12□□□□□ -0.95
VPS28-204ENST00000526054 QPRTQ15274 297 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 VMACQ2NL98 169 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 CCDC121Q6ZUS5 278 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 ZNF550Q7Z398 422 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 PATL1Q86TB9 770 aaKnown RBP9.12□□□□□ -0.95
VPS28-204ENST00000526054 CALHM3Q86XJ0 350 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 VRK2Q86Y07 508 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 GTPBP8Q8N3Z3 284 aaPredicted RBP9.12□□□□□ -0.95
VPS28-204ENST00000526054 MEIOBQ8N635 442 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 FITM2Q8N6M3 262 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 C9orf106Q8NAJ2 232 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 BHLHE22Q8NFJ8 381 aaPredicted RBP9.12□□□□□ -0.95
VPS28-204ENST00000526054 ZNF563Q8TA94 476 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 GPR119Q8TDV5 335 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 TMEM234Q8WY98 164 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 ST8SIA1Q92185 356 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 RNF145Q96MT1 663 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 CALHM2Q9HA72 323 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 NDE1Q9NXR1 346 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 SLC13A4Q9UKG4 626 aa9.12□□□□□ -0.95
VPS28-204ENST00000526054 TNFSF12-TNFSF13A0A0A6YY99 330 aa9.11□□□□□ -0.95
VPS28-204ENST00000526054 CDHR4A6H8M9 788 aa9.11□□□□□ -0.95
VPS28-204ENST00000526054 CFAP73A6NFT4 308 aa9.11□□□□□ -0.95
VPS28-204ENST00000526054 CLCA1A8K7I4 914 aa9.11□□□□□ -0.95
VPS28-204ENST00000526054 H3BML4 177 aa9.11□□□□□ -0.95
VPS28-204ENST00000526054 DNAJA2O60884 412 aa9.11□□□□□ -0.95
VPS28-204ENST00000526054 GOSR1O95249 250 aa9.11□□□□□ -0.95
VPS28-204ENST00000526054 ATE1O95260 518 aa9.11□□□□□ -0.95
VPS28-204ENST00000526054 IL18BPO95998 194 aa9.11□□□□□ -0.95
VPS28-204ENST00000526054 LINGO3P0C6S8 592 aa9.11□□□□□ -0.95
VPS28-204ENST00000526054 EPXP11678 715 aa9.11□□□□□ -0.95
VPS28-204ENST00000526054 CPN1P15169 458 aa9.11□□□□□ -0.95
VPS28-204ENST00000526054 ZNF708P17019 499 aa9.11□□□□□ -0.95
VPS28-204ENST00000526054 PRKCAP17252 672 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms