RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 UFSP2Q9NUQ7 469 aa4.17□□□□□ -1.74
CD44-220ENST00000525688 MS4A12Q9NXJ0 267 aa4.17□□□□□ -1.74
CD44-220ENST00000525688 FLRT3Q9NZU0 649 aa4.17□□□□□ -1.74
CD44-220ENST00000525688 LCMT1Q9UIC8 334 aa4.17□□□□□ -1.74
CD44-220ENST00000525688 PSMD13Q9UNM6 376 aa4.17□□□□□ -1.74
CD44-220ENST00000525688 FAF1Q9UNN5 650 aaPredicted RBP4.17□□□□□ -1.74
CD44-220ENST00000525688 CSDC2Q9Y534 153 aaKnown RBP4.17□□□□□ -1.74
CD44-220ENST00000525688 COL2A1P02458 1487 aaPredicted RBP4.17□□□□□ -1.74
CD44-220ENST00000525688 MAST2Q6P0Q8 1798 aa4.17□□□□□ -1.74
CD44-220ENST00000525688 DOCK2Q92608 1830 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 MYO5AQ9Y4I1 1855 aaKnown RBP4.16□□□□□ -1.74
CD44-220ENST00000525688 PPIAL4EA0A075B759 164 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 TRBV11-1A0A0K0K1C0 115 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 SMCO3A2RU48 225 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 E9PMD0 336 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 F8VVB4 439 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 F8VWA3 439 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 SGK494L7N484 410 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 M0R296 226 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 P2RY10O00398 339 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 FPGTO14772 594 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 ATP6V0E1O15342 81 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 RS1O15537 224 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 SCGNO76038 276 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 TSHBP01222 138 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 MT-ND2P03891 347 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 APRTP07741 180 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 F7P08709 466 aaPredicted RBP4.16□□□□□ -1.74
CD44-220ENST00000525688 FRMD6-AS1P0C7T7 363 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 PPIAL4FP0DN26 164 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 GP9P14770 177 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 NCK1P16333 377 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 IL12BP29460 328 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 CASP14P31944 242 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 CCKARP32238 428 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 NKX2-1P43699 371 aaPredicted RBP4.16□□□□□ -1.74
CD44-220ENST00000525688 NDST1P52848 882 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 GAS1P54826 345 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 HERV-K104P61576 105 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 PSMC5P62195 406 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 CDK16Q00536 496 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 SIGLEC14Q08ET2 396 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 NME3Q13232 169 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 PMS2P3Q13401 168 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 NFATC2Q13469 925 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 HEPACAMQ14CZ8 416 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 PSG3Q16557 428 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 SYPL1Q16563 259 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 KYAT1Q16773 422 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 ZNF528Q3MIS6 628 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 LINC01620Q4KN68 170 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 ZNF585BQ52M93 769 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 C6orf183Q5T699 404 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 HIST2H2AA3Q6FI13 130 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 OR2A2Q6IF42 318 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 SLC26A9Q7LBE3 791 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 GPR141Q7Z602 305 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 TGIF2LXQ8IUE1 241 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 CDK20Q8IZL9 346 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 EID3Q8N140 333 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 DNAJC22Q8N4W6 341 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 SNX31Q8N9S9 440 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 COLGALT1Q8NBJ5 622 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 FBXL13Q8NEE6 735 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 KLHDC9Q8NEP7 349 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 OR51L1Q8NGJ5 315 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 OR1L4Q8NGR5 311 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 ING5Q8WYH8 240 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 LHX4Q969G2 390 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 TMEM45BQ96B21 275 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 PYCR2Q96C36 320 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 PPP1R14BQ96C90 147 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 ZNF274Q96GC6 653 aaPredicted RBP4.16□□□□□ -1.74
CD44-220ENST00000525688 TGM7Q96PF1 710 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 SELENOSQ9BQE4 189 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 URM1Q9BTM9 101 aaKnown RBP4.16□□□□□ -1.74
CD44-220ENST00000525688 GSDMCQ9BYG8 508 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 KRTAP4-2Q9BYR5 136 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 OR2B2Q9GZK3 357 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 SDCBP2Q9H190 292 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 BOLA2Q9H3K6 86 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 NARFLQ9H6Q4 476 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 ZNF556Q9HAH1 456 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 CCNB1IP1Q9NPC3 277 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 CLEC5AQ9NY25 188 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 SENP1Q9P0U3 644 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 PITPNC1Q9UKF7 332 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 ZNF346Q9UL40 294 aaKnown RBP4.16□□□□□ -1.74
CD44-220ENST00000525688 ZNF490Q9ULM2 529 aaPredicted RBP4.16□□□□□ -1.74
CD44-220ENST00000525688 PPIAL4AQ9Y536 164 aa4.16□□□□□ -1.74
CD44-220ENST00000525688 A0A1W2PQ72 361 aa4.15□□□□□ -1.75
CD44-220ENST00000525688 RAB19A4D1S5 217 aa4.15□□□□□ -1.75
CD44-220ENST00000525688 FBLL1A6NHQ2 334 aaKnown RBP4.15□□□□□ -1.75
CD44-220ENST00000525688 A8MU76 341 aa4.15□□□□□ -1.75
CD44-220ENST00000525688 HHLA1C9JL84 531 aa4.15□□□□□ -1.75
CD44-220ENST00000525688 NPIPA3F8WFD2 350 aa4.15□□□□□ -1.75
CD44-220ENST00000525688 NDUFAB1O14561 156 aa4.15□□□□□ -1.75
CD44-220ENST00000525688 GPR171O14626 319 aa4.15□□□□□ -1.75
CD44-220ENST00000525688 STX7O15400 261 aaKnown RBP4.15□□□□□ -1.75
CD44-220ENST00000525688 COCHO43405 550 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms