RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 GPATCH2Q9NW75 528 aa18.59■□□□□ 0.57
SQSTM1-210ENST00000506042 HDGFL3Q9Y3E1 203 aa18.59■□□□□ 0.57
SQSTM1-210ENST00000506042 FBN3Q75N90 2809 aa18.59■□□□□ 0.57
SQSTM1-210ENST00000506042 FAM234BA2RU67 622 aa18.58■□□□□ 0.56
SQSTM1-210ENST00000506042 SHISA9B4DS77 424 aa18.58■□□□□ 0.56
SQSTM1-210ENST00000506042 EFNA2O43921 213 aa18.58■□□□□ 0.56
SQSTM1-210ENST00000506042 RAD51DO75771 328 aa18.58■□□□□ 0.56
SQSTM1-210ENST00000506042 FAM153BP0C7A2 387 aa18.58■□□□□ 0.56
SQSTM1-210ENST00000506042 PAX7P23759 505 aa18.58■□□□□ 0.56
SQSTM1-210ENST00000506042 HTR3AP46098 478 aa18.58■□□□□ 0.56
SQSTM1-210ENST00000506042 ANXA11P50995 505 aaKnown RBP18.58■□□□□ 0.56
SQSTM1-210ENST00000506042 TOMM34Q15785 309 aaPredicted RBP18.58■□□□□ 0.56
SQSTM1-210ENST00000506042 ZNF141Q15928 474 aa18.58■□□□□ 0.56
SQSTM1-210ENST00000506042 DNM1P46Q6ZS02 220 aa18.58■□□□□ 0.56
SQSTM1-210ENST00000506042 C4orf33Q8N1A6 199 aa18.58■□□□□ 0.56
SQSTM1-210ENST00000506042 ZNF433Q8N7K0 673 aaPredicted RBP18.58■□□□□ 0.56
SQSTM1-210ENST00000506042 FAM168AQ92567 244 aa18.58■□□□□ 0.56
SQSTM1-210ENST00000506042 TUBGCP3Q96CW5 907 aa18.58■□□□□ 0.56
SQSTM1-210ENST00000506042 TNFRSF13CQ96RJ3 184 aa18.58■□□□□ 0.56
SQSTM1-210ENST00000506042 TXLNGYQ9BZA5 131 aa18.58■□□□□ 0.56
SQSTM1-210ENST00000506042 ACER3Q9NUN7 267 aa18.58■□□□□ 0.56
SQSTM1-210ENST00000506042 TMEM160Q9NX00 188 aa18.58■□□□□ 0.56
SQSTM1-210ENST00000506042 MKS1Q9NXB0 559 aa18.58■□□□□ 0.56
SQSTM1-210ENST00000506042 NOP53Q9NZM5 478 aaKnown RBP18.58■□□□□ 0.56
SQSTM1-210ENST00000506042 UPB1Q9UBR1 384 aa18.58■□□□□ 0.56
SQSTM1-210ENST00000506042 B3GALT5Q9Y2C3 310 aa18.58■□□□□ 0.56
SQSTM1-210ENST00000506042 FKBP7Q9Y680 259 aa18.58■□□□□ 0.56
SQSTM1-210ENST00000506042 RTTNQ86VV8 2226 aa18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 IGKV3D-15A0A087WSY6 115 aa18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 GOLGA8QA0A0J9YX86 632 aa18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 GOLGA8OA6NCC3 632 aa18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 NPIPB9F8W1W9 429 aa18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 GOLGA8NF8WBI6 632 aa18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 EIF1BO60739 113 aaKnown RBP18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 RAMP1O60894 148 aa18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 PMS2P2O95744 297 aa18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 UBTFL6P0CB48 400 aaPredicted RBP18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 HNF1AP20823 631 aa18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 IGHV1-2P23083 117 aa18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 CASP9P55211 416 aa18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 SESN3P58005 492 aa18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 LOXL1Q08397 574 aaPredicted RBP18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 GNA13Q14344 377 aa18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 PTGR1Q14914 329 aa18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 PGS1Q32NB8 556 aa18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 ARHGAP11BQ3KRB8 267 aa18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 DDX59Q5T1V6 619 aaKnown RBP eCLIP18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 IL23RQ5VWK5 629 aa18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 ABHD12BQ7Z5M8 362 aaPredicted RBP18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 KIRREL3Q8IZU9 778 aa18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 C17orf78Q8N4C9 275 aa18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 PMM1Q92871 262 aa18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 ZIM3Q96PE6 472 aa18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 ZNF300Q96RE9 604 aaPredicted RBP18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 KCNS3Q9BQ31 491 aa18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 NAA11Q9BSU3 229 aaPredicted RBP18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 SHARPINQ9H0F6 387 aa18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 ANKZF1Q9H8Y5 726 aa18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 CHRNA9Q9UGM1 479 aa18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 GDF2Q9UK05 429 aaPredicted RBP18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 AMDHD2Q9Y303 409 aa18.57■□□□□ 0.56
SQSTM1-210ENST00000506042 RNF103-CHMP3A0A140T963 221 aa18.56■□□□□ 0.56
SQSTM1-210ENST00000506042 SLU7O95391 586 aaKnown RBP18.56■□□□□ 0.56
SQSTM1-210ENST00000506042 WNT11O96014 354 aa18.56■□□□□ 0.56
SQSTM1-210ENST00000506042 THBS1P07996 1170 aa18.56■□□□□ 0.56
SQSTM1-210ENST00000506042 ZNF83P51522 516 aa18.56■□□□□ 0.56
SQSTM1-210ENST00000506042 MAP2K6P52564 334 aa18.56■□□□□ 0.56
SQSTM1-210ENST00000506042 CHRNEQ04844 493 aa18.56■□□□□ 0.56
SQSTM1-210ENST00000506042 SKP2Q13309 424 aa18.56■□□□□ 0.56
SQSTM1-210ENST00000506042 SMU1Q2TAY7 513 aa18.56■□□□□ 0.56
SQSTM1-210ENST00000506042 NDUFAF6Q330K2 333 aa18.56■□□□□ 0.56
SQSTM1-210ENST00000506042 C6orf136Q5SQH8 315 aa18.56■□□□□ 0.56
SQSTM1-210ENST00000506042 C6orf52Q5T4I8 152 aa18.56■□□□□ 0.56
SQSTM1-210ENST00000506042 CYB5R2Q6BCY4 276 aa18.56■□□□□ 0.56
SQSTM1-210ENST00000506042 GRINAQ7Z429 371 aa18.56■□□□□ 0.56
SQSTM1-210ENST00000506042 C1orf162Q8NEQ5 155 aaPredicted RBP18.56■□□□□ 0.56
SQSTM1-210ENST00000506042 OR52N5Q8NH56 324 aa18.56■□□□□ 0.56
SQSTM1-210ENST00000506042 OR5AK3PQ8NH89 298 aa18.56■□□□□ 0.56
SQSTM1-210ENST00000506042 AGR3Q8TD06 166 aa18.56■□□□□ 0.56
SQSTM1-210ENST00000506042 PROX1Q92786 737 aa18.56■□□□□ 0.56
SQSTM1-210ENST00000506042 INPP5KQ9BT40 448 aa18.56■□□□□ 0.56
SQSTM1-210ENST00000506042 C1orf50Q9BV19 199 aa18.56■□□□□ 0.56
SQSTM1-210ENST00000506042 SLC9A8Q9Y2E8 581 aa18.56■□□□□ 0.56
SQSTM1-210ENST00000506042 WDR45Q9Y484 360 aa18.56■□□□□ 0.56
SQSTM1-210ENST00000506042 C9JVG2 144 aa18.55■□□□□ 0.56
SQSTM1-210ENST00000506042 H7C417 338 aa18.55■□□□□ 0.56
SQSTM1-210ENST00000506042 M0R1B8 84 aa18.55■□□□□ 0.56
SQSTM1-210ENST00000506042 OIP5O43482 229 aa18.55■□□□□ 0.56
SQSTM1-210ENST00000506042 CD8AP01732 235 aa18.55■□□□□ 0.56
SQSTM1-210ENST00000506042 GUSBP08236 651 aa18.55■□□□□ 0.56
SQSTM1-210ENST00000506042 CD40P25942 277 aa18.55■□□□□ 0.56
SQSTM1-210ENST00000506042 VLDLRP98155 873 aa18.55■□□□□ 0.56
SQSTM1-210ENST00000506042 TMEM249Q2WGJ8 235 aa18.55■□□□□ 0.56
SQSTM1-210ENST00000506042 XKR7Q5GH72 579 aa18.55■□□□□ 0.56
SQSTM1-210ENST00000506042 ABLIM2Q6H8Q1 611 aa18.55■□□□□ 0.56
SQSTM1-210ENST00000506042 C6orf120Q7Z4R8 191 aa18.55■□□□□ 0.56
SQSTM1-210ENST00000506042 ARFGAP2Q8N6H7 521 aa18.55■□□□□ 0.56
SQSTM1-210ENST00000506042 OR5D16Q8NGK9 328 aa18.55■□□□□ 0.56
SQSTM1-210ENST00000506042 ZNF775Q96BV0 537 aaPredicted RBP18.55■□□□□ 0.56
SQSTM1-210ENST00000506042 DDIT4LQ96D03 193 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms