RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-212	ENST00000488896	FASTKD2	Q9NYY8	710 aa	Known RBP eCLIP	2.59	□□□□□ -1.99
PTPN4-212	ENST00000488896	SPAST	Q9UBP0	616 aa		2.59	□□□□□ -1.99
PTPN4-212	ENST00000488896	KIF25	Q9UIL4	384 aa		2.59	□□□□□ -1.99
PTPN4-212	ENST00000488896	MAD1L1	Q9Y6D9	718 aa		2.59	□□□□□ -1.99
PTPN4-212	ENST00000488896	IGHV3OR16-13	A0A075B7E8	117 aa		2.58	□□□□□ -2
PTPN4-212	ENST00000488896	SPAG7	O75391	227 aa		2.58	□□□□□ -2
PTPN4-212	ENST00000488896	TOM1L1	O75674	476 aa		2.58	□□□□□ -2
PTPN4-212	ENST00000488896	IGKV1-17	P01599	117 aa		2.58	□□□□□ -2
PTPN4-212	ENST00000488896	CRISP2	P16562	243 aa		2.58	□□□□□ -2
PTPN4-212	ENST00000488896	TAS2R19	P59542	299 aa		2.58	□□□□□ -2
PTPN4-212	ENST00000488896	RIPPLY1	Q0D2K3	151 aa		2.58	□□□□□ -2
PTPN4-212	ENST00000488896	PSG5	Q15238	335 aa		2.58	□□□□□ -2
PTPN4-212	ENST00000488896	LYPD1	Q8N2G4	141 aa		2.58	□□□□□ -2
PTPN4-212	ENST00000488896	RNF182	Q8N6D2	247 aa		2.58	□□□□□ -2
PTPN4-212	ENST00000488896	OR2L8	Q8NGY9	312 aa		2.58	□□□□□ -2
PTPN4-212	ENST00000488896	RAPGEF5	Q92565	580 aa		2.58	□□□□□ -2
PTPN4-212	ENST00000488896	GSDMC	Q9BYG8	508 aa		2.58	□□□□□ -2
PTPN4-212	ENST00000488896	TPK1	Q9H3S4	243 aa		2.58	□□□□□ -2
PTPN4-212	ENST00000488896	ZNF385D	Q9H6B1	395 aa		2.58	□□□□□ -2
PTPN4-212	ENST00000488896	DHX33	Q9H6R0	707 aa	Known RBP	2.58	□□□□□ -2
PTPN4-212	ENST00000488896	EML4	Q9HC35	981 aa	Known RBP	2.58	□□□□□ -2
PTPN4-212	ENST00000488896	DEC1	Q9P2X7	70 aa		2.58	□□□□□ -2
PTPN4-212	ENST00000488896	IL19	Q9UHD0	177 aa		2.58	□□□□□ -2
PTPN4-212	ENST00000488896	ZNF835	Q9Y2P0	537 aa		2.58	□□□□□ -2
PTPN4-212	ENST00000488896	SPACA6	W5XKT8	324 aa		2.58	□□□□□ -2
PTPN4-212	ENST00000488896	CUX2	O14529	1486 aa		2.58	□□□□□ -2
PTPN4-212	ENST00000488896	FAM230A	A0A1W2PPH8	454 aa		2.57	□□□□□ -2
PTPN4-212	ENST00000488896	VSTM2B	A6NLU5	285 aa		2.57	□□□□□ -2
PTPN4-212	ENST00000488896	KRTAP4-16	G5E9R7	235 aa	Predicted RBP	2.57	□□□□□ -2
PTPN4-212	ENST00000488896	AIRE	O43918	545 aa		2.57	□□□□□ -2
PTPN4-212	ENST00000488896	CHTF8	P0CG12	524 aa		2.57	□□□□□ -2
PTPN4-212	ENST00000488896	ETS1	P14921	441 aa		2.57	□□□□□ -2
PTPN4-212	ENST00000488896	PAICS	P22234	425 aa	Known RBP	2.57	□□□□□ -2
PTPN4-212	ENST00000488896	OAS2	P29728	719 aa	Known RBP	2.57	□□□□□ -2
PTPN4-212	ENST00000488896	OTX2	P32243	289 aa		2.57	□□□□□ -2
PTPN4-212	ENST00000488896	PTGFR	P43088	359 aa		2.57	□□□□□ -2
PTPN4-212	ENST00000488896	MNAT1	P51948	309 aa		2.57	□□□□□ -2
PTPN4-212	ENST00000488896	RAB40B	Q12829	278 aa		2.57	□□□□□ -2
PTPN4-212	ENST00000488896	ARL6IP1	Q15041	203 aa		2.57	□□□□□ -2
PTPN4-212	ENST00000488896	TRIP10	Q15642	601 aa		2.57	□□□□□ -2
PTPN4-212	ENST00000488896	DEFB116	Q30KQ4	102 aa		2.57	□□□□□ -2
PTPN4-212	ENST00000488896	PIGG	Q5H8A4	983 aa		2.57	□□□□□ -2
PTPN4-212	ENST00000488896	CCDC137	Q6PK04	289 aa	Known RBP	2.57	□□□□□ -2
PTPN4-212	ENST00000488896	IGFL1	Q6UW32	110 aa		2.57	□□□□□ -2
PTPN4-212	ENST00000488896	C16orf62	Q7Z3J2	963 aa		2.57	□□□□□ -2
PTPN4-212	ENST00000488896	TMEM17	Q86X19	198 aa		2.57	□□□□□ -2
PTPN4-212	ENST00000488896	TTC5	Q8N0Z6	440 aa		2.57	□□□□□ -2
PTPN4-212	ENST00000488896	BCORP1	Q8N888	145 aa		2.57	□□□□□ -2
PTPN4-212	ENST00000488896	NKAPP1	Q8N9T2	125 aa		2.57	□□□□□ -2
PTPN4-212	ENST00000488896	OR5AU1	Q8NGC0	362 aa		2.57	□□□□□ -2
PTPN4-212	ENST00000488896	OR56B4	Q8NH76	319 aa		2.57	□□□□□ -2
PTPN4-212	ENST00000488896	NDRG1	Q92597	394 aa	Known RBP	2.57	□□□□□ -2
PTPN4-212	ENST00000488896	UBE4B	O95155	1302 aa		2.57	□□□□□ -2
PTPN4-212	ENST00000488896	IGF1	P05019	195 aa		2.56	□□□□□ -2
PTPN4-212	ENST00000488896	PNMA6A	P0CW24	399 aa	Predicted RBP	2.56	□□□□□ -2
PTPN4-212	ENST00000488896	ICAM2	P13598	275 aa		2.56	□□□□□ -2
PTPN4-212	ENST00000488896	CD80	P33681	288 aa		2.56	□□□□□ -2
PTPN4-212	ENST00000488896	KLK7	P49862	253 aa		2.56	□□□□□ -2
PTPN4-212	ENST00000488896	NAPA	P54920	295 aa		2.56	□□□□□ -2
PTPN4-212	ENST00000488896	SLC5A12	Q1EHB4	618 aa		2.56	□□□□□ -2
PTPN4-212	ENST00000488896	C6orf120	Q7Z4R8	191 aa		2.56	□□□□□ -2
PTPN4-212	ENST00000488896	LHFPL4	Q7Z7J7	247 aa		2.56	□□□□□ -2
PTPN4-212	ENST00000488896	CBWD2	Q8IUF1	395 aa		2.56	□□□□□ -2
PTPN4-212	ENST00000488896	C15orf54	Q8N8G6	183 aa		2.56	□□□□□ -2
PTPN4-212	ENST00000488896	PNPT1	Q8TCS8	783 aa	Known RBP	2.56	□□□□□ -2
PTPN4-212	ENST00000488896	SELENOM	Q8WWX9	145 aa		2.56	□□□□□ -2
PTPN4-212	ENST00000488896	ARPC1A	Q92747	370 aa		2.56	□□□□□ -2
PTPN4-212	ENST00000488896	RPL3L	Q92901	407 aa	Known RBP	2.56	□□□□□ -2
PTPN4-212	ENST00000488896	TESK2	Q96S53	571 aa		2.56	□□□□□ -2
PTPN4-212	ENST00000488896	NAT10	Q9H0A0	1025 aa	Known RBP	2.56	□□□□□ -2
PTPN4-212	ENST00000488896	RAB17	Q9H0T7	212 aa		2.56	□□□□□ -2
PTPN4-212	ENST00000488896	AGPAT5	Q9NUQ2	364 aa		2.56	□□□□□ -2
PTPN4-212	ENST00000488896	COL1A2	P08123	1366 aa		2.56	□□□□□ -2
PTPN4-212	ENST00000488896		A0A1B0GUL7	405 aa		2.55	□□□□□ -2
PTPN4-212	ENST00000488896		A6NIZ1	184 aa		2.55	□□□□□ -2
PTPN4-212	ENST00000488896	PRKY	O43930	277 aa		2.55	□□□□□ -2
PTPN4-212	ENST00000488896	B3GAT3	O94766	335 aa		2.55	□□□□□ -2
PTPN4-212	ENST00000488896	LGI1	O95970	557 aa		2.55	□□□□□ -2
PTPN4-212	ENST00000488896	TGFA	P01135	160 aa		2.55	□□□□□ -2
PTPN4-212	ENST00000488896	ZNF286B	P0CG31	522 aa		2.55	□□□□□ -2
PTPN4-212	ENST00000488896	IGFBP3	P17936	291 aa	Predicted RBP	2.55	□□□□□ -2
PTPN4-212	ENST00000488896	PRKX	P51817	358 aa		2.55	□□□□□ -2
PTPN4-212	ENST00000488896	CRISP3	P54108	245 aa		2.55	□□□□□ -2
PTPN4-212	ENST00000488896	RAP1B	P61224	184 aa		2.55	□□□□□ -2
PTPN4-212	ENST00000488896	ACTA2	P62736	377 aa		2.55	□□□□□ -2
PTPN4-212	ENST00000488896	ACTC1	P68032	377 aa		2.55	□□□□□ -2
PTPN4-212	ENST00000488896	GAMT	Q14353	236 aa		2.55	□□□□□ -2
PTPN4-212	ENST00000488896	CCDC57	Q2TAC2	916 aa		2.55	□□□□□ -2
PTPN4-212	ENST00000488896	C1orf100	Q5SVJ3	147 aa		2.55	□□□□□ -2
PTPN4-212	ENST00000488896	SNX32	Q86XE0	403 aa		2.55	□□□□□ -2
PTPN4-212	ENST00000488896	ELMOD2	Q8IZ81	293 aa		2.55	□□□□□ -2
PTPN4-212	ENST00000488896	KDM8	Q8N371	416 aa		2.55	□□□□□ -2
PTPN4-212	ENST00000488896	SVOPL	Q8N434	492 aa		2.55	□□□□□ -2
PTPN4-212	ENST00000488896	CYB561D1	Q8N8Q1	229 aa		2.55	□□□□□ -2
PTPN4-212	ENST00000488896	OR10G2	Q8NGC3	310 aa		2.55	□□□□□ -2
PTPN4-212	ENST00000488896	OR51S1	Q8NGJ8	323 aa		2.55	□□□□□ -2
PTPN4-212	ENST00000488896	NANP	Q8TBE9	248 aa		2.55	□□□□□ -2
PTPN4-212	ENST00000488896	ACER1	Q8TDN7	264 aa		2.55	□□□□□ -2
PTPN4-212	ENST00000488896	PHF10	Q8WUB8	498 aa	Known RBP	2.55	□□□□□ -2
PTPN4-212	ENST00000488896	AKR1E2	Q96JD6	320 aa		2.55	□□□□□ -2

Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms