RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 ANGPT1Q15389 498 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 CHI3L2Q15782 390 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 RFX4Q33E94 735 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 POM121L1PQ3SYA9 428 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 SFT2D3Q587I9 215 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 TTC23Q5W5X9 447 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 PDPK2PQ6A1A2 396 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 HACD2Q6Y1H2 254 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 TMUB2Q71RG4 321 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 SIAH3Q8IW03 269 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 AQP12AQ8IXF9 295 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 ANKFN1Q8N957 763 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 FBXL13Q8NEE6 735 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 OR7G3Q8NG95 312 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 LIPHQ8WWY8 451 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 PYDC1Q8WXC3 89 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 SHC3Q92529 594 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 TBRG4Q969Z0 631 aaKnown RBP eCLIP4.65□□□□□ -1.67
USP40-213ENST00000483216 PPWD1Q96BP3 646 aaKnown RBP4.65□□□□□ -1.67
USP40-213ENST00000483216 ROPN1LQ96C74 230 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 CCDC124Q96CT7 223 aaKnown RBP4.65□□□□□ -1.67
USP40-213ENST00000483216 EEF2KMTQ96G04 330 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 MBOAT7Q96N66 472 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 PPP1R2P1Q96PQ5 205 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 FAM111AQ96PZ2 611 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 HOPXQ9BPY8 73 aaPredicted RBP4.65□□□□□ -1.67
USP40-213ENST00000483216 ADPGKQ9BRR6 497 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 SLC39A8Q9C0K1 460 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 SMYD3Q9H7B4 428 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 UGT1A7Q9HAW7 530 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 UGT1A10Q9HAW8 530 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 UGT1A8Q9HAW9 530 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 EML4Q9HC35 981 aaKnown RBP4.65□□□□□ -1.67
USP40-213ENST00000483216 DEPPQ9NTK1 212 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 DNAJC17Q9NVM6 304 aaKnown RBP4.65□□□□□ -1.67
USP40-213ENST00000483216 COQ4Q9Y3A0 265 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 KIAA1217Q5T5P2 1943 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 PLIN4Q96Q06 1357 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 ANKRD31Q8N7Z5 1873 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 NRXN2Q9P2S2 1712 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 MYH10P35580 1976 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 IGHV3-16A0A0C4DH30 117 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 TRBV5-4A0A0C4DH59 114 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 RNF103-CHMP3A0A140T963 221 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 MAGEB16A2A368 324 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 BCLAF3A2AJT9 711 aaKnown RBP4.64□□□□□ -1.67
USP40-213ENST00000483216 HEATR9A2RTY3 570 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 KRTAP9-6A8MVA2 160 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 ZNF487B1APH4 448 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 H3BSA7 217 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 M0R3G1 203 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 ZBTB5O15062 677 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 GPRIN2O60269 458 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 HPP00738 406 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 NPPAP01160 153 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 BGNP21810 368 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 FASP25445 335 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 RRM2P31350 389 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 SLC1A6P48664 564 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 GSK3BP49841 420 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 KHKP50053 298 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 RAB25P57735 213 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 COPZ1P61923 177 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 YWHAGP61981 247 aaKnown RBP eCLIP4.64□□□□□ -1.67
USP40-213ENST00000483216 CNTN2Q02246 1040 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 SLC3A1Q07837 685 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 BST1Q10588 318 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 BST2Q10589 180 aaKnown RBP4.64□□□□□ -1.67
USP40-213ENST00000483216 IL18R1Q13478 541 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 CYTH1Q15438 398 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 MEP1BQ16820 701 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 LRRC36Q1X8D7 754 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 TYSND1Q2T9J0 566 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 HECTD3Q5T447 861 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 AGAP6Q5VW22 663 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 SEL1L3Q68CR1 1132 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 TWF2Q6IBS0 349 aaKnown RBP4.64□□□□□ -1.67
USP40-213ENST00000483216 SPOPLQ6IQ16 392 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 ZNF544Q6NX49 715 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 DCUN1D2Q6PH85 259 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 IYDQ6PHW0 289 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 ZNF720Q7Z2F6 126 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 PHF13Q86YI8 300 aaPredicted RBP4.64□□□□□ -1.67
USP40-213ENST00000483216 MCOLN2Q8IZK6 566 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 CLYBLQ8N0X4 340 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 ZCCHC7Q8N3Z6 543 aaKnown RBP4.64□□□□□ -1.67
USP40-213ENST00000483216 TMEM35BQ8NCS4 154 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 FBXO36Q8NEA4 188 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 LILRB4Q8NHJ6 448 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 DCAKDQ8WVC6 231 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 RFT1Q96AA3 541 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 CPXM1Q96SM3 734 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 RBM24Q9BX46 236 aaKnown RBP4.64□□□□□ -1.67
USP40-213ENST00000483216 GON7Q9BXV9 100 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 COA1Q9GZY4 146 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 TRPV6Q9H1D0 765 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 C12orf10Q9HB07 376 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 PLEKHA3Q9HB20 300 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 NMUR1Q9HB89 426 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 TM9SF3Q9HD45 589 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms