RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 IQCCQ4KMZ1 466 aa13.34□□□□□ -0.27
COL9A3-209ENST00000469852 NHSL2Q5HYW2 709 aa13.34□□□□□ -0.27
COL9A3-209ENST00000469852 EMC4Q5J8M3 183 aa13.34□□□□□ -0.27
COL9A3-209ENST00000469852 ENTPD8Q5MY95 495 aa13.34□□□□□ -0.27
COL9A3-209ENST00000469852 WBP2NLQ6ICG8 309 aa13.34□□□□□ -0.27
COL9A3-209ENST00000469852 ARHGAP11AQ6P4F7 1023 aa13.34□□□□□ -0.27
COL9A3-209ENST00000469852 FKBP9P1Q75LS8 142 aa13.34□□□□□ -0.27
COL9A3-209ENST00000469852 ADGRG3Q86Y34 549 aa13.34□□□□□ -0.27
COL9A3-209ENST00000469852 LSMEM1Q8N8F7 131 aa13.34□□□□□ -0.27
COL9A3-209ENST00000469852 ST6GALNAC3Q8NDV1 305 aa13.34□□□□□ -0.27
COL9A3-209ENST00000469852 LZICQ8WZA0 190 aa13.34□□□□□ -0.27
COL9A3-209ENST00000469852 ABTB1Q969K4 478 aaPredicted RBP13.34□□□□□ -0.27
COL9A3-209ENST00000469852 PYURFQ96I23 114 aa13.34□□□□□ -0.27
COL9A3-209ENST00000469852 C7orf34Q96L11 122 aa13.34□□□□□ -0.27
COL9A3-209ENST00000469852 MRGPRX4Q96LA9 322 aa13.34□□□□□ -0.27
COL9A3-209ENST00000469852 TIMP4Q99727 224 aa13.34□□□□□ -0.27
COL9A3-209ENST00000469852 ZNF559Q9BR84 538 aa13.34□□□□□ -0.27
COL9A3-209ENST00000469852 OSGIN1Q9UJX0 560 aa13.34□□□□□ -0.27
COL9A3-209ENST00000469852 SLC9A8Q9Y2E8 581 aa13.34□□□□□ -0.27
COL9A3-209ENST00000469852 KIAA1549Q9HCM3 1950 aa13.33□□□□□ -0.28
COL9A3-209ENST00000469852 A0A0B4J2E0 115 aa13.33□□□□□ -0.28
COL9A3-209ENST00000469852 A0A1B0GX12 115 aa13.33□□□□□ -0.28
COL9A3-209ENST00000469852 UQCRBP14927 111 aa13.33□□□□□ -0.28
COL9A3-209ENST00000469852 CCNA2P20248 432 aa13.33□□□□□ -0.28
COL9A3-209ENST00000469852 PTNP21246 168 aa13.33□□□□□ -0.28
COL9A3-209ENST00000469852 ADH6P28332 368 aa13.33□□□□□ -0.28
COL9A3-209ENST00000469852 EIF1P41567 113 aaKnown RBP13.33□□□□□ -0.28
COL9A3-209ENST00000469852 UQCRFS1P47985 274 aa13.33□□□□□ -0.28
COL9A3-209ENST00000469852 SUCLG1P53597 346 aaKnown RBP13.33□□□□□ -0.28
COL9A3-209ENST00000469852 CLDN18P56856 261 aa13.33□□□□□ -0.28
COL9A3-209ENST00000469852 CLDN20P56880 219 aa13.33□□□□□ -0.28
COL9A3-209ENST00000469852 COPZ1P61923 177 aa13.33□□□□□ -0.28
COL9A3-209ENST00000469852 VLDLRP98155 873 aa13.33□□□□□ -0.28
COL9A3-209ENST00000469852 FLOT2Q14254 428 aa13.33□□□□□ -0.28
COL9A3-209ENST00000469852 GRINAQ7Z429 371 aa13.33□□□□□ -0.28
COL9A3-209ENST00000469852 ATG4DQ86TL0 474 aaPredicted RBP13.33□□□□□ -0.28
COL9A3-209ENST00000469852 GGNQ86UU5 652 aa13.33□□□□□ -0.28
COL9A3-209ENST00000469852 RANBP3LQ86VV4 465 aaPredicted RBP13.33□□□□□ -0.28
COL9A3-209ENST00000469852 ATP6V1C2Q8NEY4 427 aa13.33□□□□□ -0.28
COL9A3-209ENST00000469852 OR5M9Q8NGP3 310 aa13.33□□□□□ -0.28
COL9A3-209ENST00000469852 GEMIN6Q8WXD5 167 aaKnown RBP13.33□□□□□ -0.28
COL9A3-209ENST00000469852 TMEM234Q8WY98 164 aa13.33□□□□□ -0.28
COL9A3-209ENST00000469852 SMPDL3BQ92485 455 aa13.33□□□□□ -0.28
COL9A3-209ENST00000469852 DTNBP1Q96EV8 351 aa13.33□□□□□ -0.28
COL9A3-209ENST00000469852 DNAJA3Q96EY1 480 aa13.33□□□□□ -0.28
COL9A3-209ENST00000469852 WDYHV1Q96HA8 205 aa13.33□□□□□ -0.28
COL9A3-209ENST00000469852 SEPHS2Q99611 448 aa13.33□□□□□ -0.28
COL9A3-209ENST00000469852 TRIM2Q9C040 744 aa13.33□□□□□ -0.28
COL9A3-209ENST00000469852 MMADHCQ9H3L0 296 aaPredicted RBP13.33□□□□□ -0.28
COL9A3-209ENST00000469852 EVA1AQ9H8M9 152 aa13.33□□□□□ -0.28
COL9A3-209ENST00000469852 PNPLA3Q9NST1 481 aa13.33□□□□□ -0.28
COL9A3-209ENST00000469852 MPDZO75970 2070 aa13.33□□□□□ -0.28
COL9A3-209ENST00000469852 UBR5O95071 2799 aaPredicted RBP13.32□□□□□ -0.28
COL9A3-209ENST00000469852 TMED7-TICAM2A0A0A6YYA0 188 aa13.32□□□□□ -0.28
COL9A3-209ENST00000469852 TMEM72A0PK05 275 aa13.32□□□□□ -0.28
COL9A3-209ENST00000469852 ERICH4A6NGS2 130 aa13.32□□□□□ -0.28
COL9A3-209ENST00000469852 KDM4EB2RXH2 506 aaPredicted RBP13.32□□□□□ -0.28
COL9A3-209ENST00000469852 ANKRD65E5RJM6 399 aa13.32□□□□□ -0.28
COL9A3-209ENST00000469852 hCG_2039718K7EN88 272 aa13.32□□□□□ -0.28
COL9A3-209ENST00000469852 FFAR1O14842 300 aa13.32□□□□□ -0.28
COL9A3-209ENST00000469852 FMO6PO60774 539 aa13.32□□□□□ -0.28
COL9A3-209ENST00000469852 DIRAS1O95057 198 aa13.32□□□□□ -0.28
COL9A3-209ENST00000469852 ACTL6AO96019 429 aa13.32□□□□□ -0.28
COL9A3-209ENST00000469852 MT-ND1P03886 318 aa13.32□□□□□ -0.28
COL9A3-209ENST00000469852 IFNW1P05000 195 aa13.32□□□□□ -0.28
COL9A3-209ENST00000469852 ZNF708P17019 499 aa13.32□□□□□ -0.28
COL9A3-209ENST00000469852 POU3F2P20265 443 aaPredicted RBP13.32□□□□□ -0.28
COL9A3-209ENST00000469852 ELK4P28324 431 aa13.32□□□□□ -0.28
COL9A3-209ENST00000469852 PTGS2P35354 604 aa13.32□□□□□ -0.28
COL9A3-209ENST00000469852 POLR2HP52434 150 aaKnown RBP13.32□□□□□ -0.28
COL9A3-209ENST00000469852 CDH12P55289 794 aa13.32□□□□□ -0.28
COL9A3-209ENST00000469852 SRYQ05066 204 aa13.32□□□□□ -0.28
COL9A3-209ENST00000469852 PIN1Q13526 163 aaPredicted RBP13.32□□□□□ -0.28
COL9A3-209ENST00000469852 MTX3Q5HYI7 312 aa13.32□□□□□ -0.28
COL9A3-209ENST00000469852 AAGABQ6PD74 315 aa13.32□□□□□ -0.28
COL9A3-209ENST00000469852 PLXDC2Q6UX71 529 aa13.32□□□□□ -0.28
COL9A3-209ENST00000469852 WDR88Q6ZMY6 472 aa13.32□□□□□ -0.28
COL9A3-209ENST00000469852 UBQLNLQ8IYU4 475 aa13.32□□□□□ -0.28
COL9A3-209ENST00000469852 ADGRG5Q8IZF4 528 aa13.32□□□□□ -0.28
COL9A3-209ENST00000469852 LILRA2Q8N149 483 aa13.32□□□□□ -0.28
COL9A3-209ENST00000469852 ADAMTS16Q8TE57 1224 aa13.32□□□□□ -0.28
COL9A3-209ENST00000469852 SLC47A1Q96FL8 570 aa13.32□□□□□ -0.28
COL9A3-209ENST00000469852 OR11A1Q9GZK7 315 aa13.32□□□□□ -0.28
COL9A3-209ENST00000469852 RHCGQ9UBD6 479 aa13.32□□□□□ -0.28
COL9A3-209ENST00000469852 A4GNTQ9UNA3 340 aa13.32□□□□□ -0.28
COL9A3-209ENST00000469852 ZNF835Q9Y2P0 537 aa13.32□□□□□ -0.28
COL9A3-209ENST00000469852 TMED7Q9Y3B3 224 aa13.32□□□□□ -0.28
COL9A3-209ENST00000469852 A0A0J9YW62 118 aa13.31□□□□□ -0.28
COL9A3-209ENST00000469852 ZC3H12DA2A288 527 aaKnown RBP13.31□□□□□ -0.28
COL9A3-209ENST00000469852 SEC14L5O43304 696 aa13.31□□□□□ -0.28
COL9A3-209ENST00000469852 SLC19A2O60779 497 aa13.31□□□□□ -0.28
COL9A3-209ENST00000469852 PRSS23O95084 383 aa13.31□□□□□ -0.28
COL9A3-209ENST00000469852 ABOP16442 354 aa13.31□□□□□ -0.28
COL9A3-209ENST00000469852 SFTPDP35247 375 aa13.31□□□□□ -0.28
COL9A3-209ENST00000469852 APOBEC1P41238 236 aaKnown RBP13.31□□□□□ -0.28
COL9A3-209ENST00000469852 RAC1P63000 192 aa13.31□□□□□ -0.28
COL9A3-209ENST00000469852 FOXD4Q12950 439 aaPredicted RBP13.31□□□□□ -0.28
COL9A3-209ENST00000469852 SELENBP1Q13228 472 aa13.31□□□□□ -0.28
COL9A3-209ENST00000469852 CCNIQ14094 377 aa13.31□□□□□ -0.28
COL9A3-209ENST00000469852 CTU2Q2VPK5 515 aaKnown RBP13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms