RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 KRBOX1C9JBD0 128 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 G3V3Q6 166 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 TOR1AO14656 332 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 KLF4O43474 513 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 PLPP2O43688 288 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 TGM6O95932 706 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 CFDP00746 253 aaPredicted RBP8.88□□□□□ -0.99
HDAC3-205ENST00000469550 CD38P28907 300 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 LCN1P31025 176 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 BSGP35613 385 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 TRIM23P36406 574 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 CTSOP43234 321 aaPredicted RBP8.88□□□□□ -0.99
HDAC3-205ENST00000469550 SRP9P49458 86 aaKnown RBP8.88□□□□□ -0.99
HDAC3-205ENST00000469550 KHKP50053 298 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 ARFIP1P53367 373 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 ADPRHP54922 357 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 ST3GAL3Q11203 375 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 HSPB3Q12988 150 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 ELAVL3Q14576 367 aaKnown RBP8.88□□□□□ -0.99
HDAC3-205ENST00000469550 PGGHGQ32M88 737 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 TMEM81Q6P7N7 255 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 WASH2PQ6VEQ5 465 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 PXKQ7Z7A4 578 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 GID4Q8IVV7 300 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 OR4N4Q8N0Y3 316 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 SDR16C5Q8N3Y7 309 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 ACBD7Q8N6N7 88 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 OR6C4Q8NGE1 309 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 PIGXQ8TBF5 258 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 TRMT10AQ8TBZ6 339 aaKnown RBP8.88□□□□□ -0.99
HDAC3-205ENST00000469550 SAP25Q8TEE9 199 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 XAGE5Q8WWM1 108 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 COQ10AQ96MF6 247 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 CMTM3Q96MX0 182 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 ARHGDIGQ99819 225 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 SORBS1Q9BX66 1292 aaKnown RBP8.88□□□□□ -0.99
HDAC3-205ENST00000469550 MFRPQ9BY79 579 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 REG4Q9BYZ8 158 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 H2AFY2Q9P0M6 372 aaPredicted RBP8.88□□□□□ -0.99
HDAC3-205ENST00000469550 ADAM29Q9UKF5 820 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 TMEM5Q9Y2B1 443 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 RAXQ9Y2V3 346 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 KCNMB2Q9Y691 235 aa8.88□□□□□ -0.99
HDAC3-205ENST00000469550 APC2O95996 2303 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 TSPAN11A1L157 253 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 TRABD2BA6NFA1 517 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 ANKRD61A6NGH8 418 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 MTRF1O75570 445 aaKnown RBP8.87□□□□□ -0.99
HDAC3-205ENST00000469550 SC5DO75845 299 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 WDPCPO95876 746 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 ACSM4P0C7M7 580 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 EPHA8P29322 1005 aaPredicted RBP8.87□□□□□ -0.99
HDAC3-205ENST00000469550 SHC1P29353 583 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 SSTR2P30874 369 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 ATP6V1E1P36543 226 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 MAP2K6P52564 334 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 NXPH1P58417 271 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 TAS2R41P59536 307 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 RPS7P62081 194 aaKnown RBP8.87□□□□□ -0.99
HDAC3-205ENST00000469550 TRA2BP62995 288 aaKnown RBP8.87□□□□□ -0.99
HDAC3-205ENST00000469550 MEF2AQ02078 507 aaPredicted RBP8.87□□□□□ -0.99
HDAC3-205ENST00000469550 DECR1Q16698 335 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 KIAA1161Q6NSJ0 714 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 TMEM220Q6QAJ8 160 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 B3GLCTQ6Y288 498 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 TMEM64Q6YI46 380 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 RRM2BQ7LG56 351 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 OVCH2Q7RTZ1 564 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 KANSL1Q7Z3B3 1105 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 SLITRK4Q8IW52 837 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 FAM98AQ8NCA5 519 aaKnown RBP8.87□□□□□ -0.99
HDAC3-205ENST00000469550 ZNF740Q8NDX6 193 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 FAM71CQ8NEG0 241 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 OR2T35Q8NGX2 323 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 GANCQ8TET4 914 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 GIMAP1Q8WWP7 306 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 DIO2Q92813 273 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 TIMP4Q99727 224 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 MS4A8Q9BY19 250 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 RBCK1Q9BYM8 510 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 FN3KQ9H479 309 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 ZCCHC4Q9H5U6 513 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 DDX31Q9H8H2 851 aaKnown RBP8.87□□□□□ -0.99
HDAC3-205ENST00000469550 TRIM36Q9NQ86 728 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 ABRACLQ9P1F3 81 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 CAMK2AQ9UQM7 478 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 SESN1Q9Y6P5 492 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 ITPR1Q14643 2758 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 ACACAQ13085 2346 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 NINQ8N4C6 2090 aa8.87□□□□□ -0.99
HDAC3-205ENST00000469550 KNL1Q8NG31 2342 aa8.86□□□□□ -0.99
HDAC3-205ENST00000469550 A0A1W2PRG6 482 aa8.86□□□□□ -0.99
HDAC3-205ENST00000469550 SLC9B1P1A6NJY1 282 aa8.86□□□□□ -0.99
HDAC3-205ENST00000469550 OR6C65A6NJZ3 312 aa8.86□□□□□ -0.99
HDAC3-205ENST00000469550 LRRN3E7EW58 273 aa8.86□□□□□ -0.99
HDAC3-205ENST00000469550 ATP6V1G2-DDX39BF2Z307 99 aa8.86□□□□□ -0.99
HDAC3-205ENST00000469550 ZNF593O00488 134 aaPredicted RBP8.86□□□□□ -0.99
HDAC3-205ENST00000469550 DVL2O14641 736 aa8.86□□□□□ -0.99
HDAC3-205ENST00000469550 SSNA1O43805 119 aa8.86□□□□□ -0.99
HDAC3-205ENST00000469550 BNIP3LO60238 219 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms