RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 AKAP1Q92667 903 aaKnown RBP eCLIP14.7□□□□□ -0.06
CCDC28B-204ENST00000469003 ROPN1LQ96C74 230 aa14.7□□□□□ -0.06
CCDC28B-204ENST00000469003 NEURL3Q96EH8 262 aa14.7□□□□□ -0.06
CCDC28B-204ENST00000469003 REPIN1Q9BWE0 567 aaKnown RBP14.7□□□□□ -0.06
CCDC28B-204ENST00000469003 POTEKPQ9BYX7 375 aa14.7□□□□□ -0.06
CCDC28B-204ENST00000469003 MEAF6Q9HAF1 191 aa14.7□□□□□ -0.06
CCDC28B-204ENST00000469003 RNF115Q9Y4L5 304 aa14.7□□□□□ -0.06
CCDC28B-204ENST00000469003 RTTNQ86VV8 2226 aa14.7□□□□□ -0.06
CCDC28B-204ENST00000469003 TRIM64A6NGJ6 449 aa14.69□□□□□ -0.06
CCDC28B-204ENST00000469003 TRIM64BA6NI03 449 aa14.69□□□□□ -0.06
CCDC28B-204ENST00000469003 E9PBE3 544 aa14.69□□□□□ -0.06
CCDC28B-204ENST00000469003 CD3EP07766 207 aa14.69□□□□□ -0.06
CCDC28B-204ENST00000469003 S100A3P33764 101 aa14.69□□□□□ -0.06
CCDC28B-204ENST00000469003 CHI3L1P36222 383 aaPredicted RBP14.69□□□□□ -0.06
CCDC28B-204ENST00000469003 APOBEC1P41238 236 aaKnown RBP14.69□□□□□ -0.06
CCDC28B-204ENST00000469003 DIO1P49895 249 aa14.69□□□□□ -0.06
CCDC28B-204ENST00000469003 CSNK2A1P68400 391 aaPredicted RBP14.69□□□□□ -0.06
CCDC28B-204ENST00000469003 SYT14P1Q58G82 188 aa14.69□□□□□ -0.06
CCDC28B-204ENST00000469003 CEP85LQ5SZL2 805 aa14.69□□□□□ -0.06
CCDC28B-204ENST00000469003 BHLHA15Q7RTS1 189 aaPredicted RBP14.69□□□□□ -0.06
CCDC28B-204ENST00000469003 ZNF75CPQ92670 426 aaPredicted RBP14.69□□□□□ -0.06
CCDC28B-204ENST00000469003 CCDC115Q96NT0 180 aa14.69□□□□□ -0.06
CCDC28B-204ENST00000469003 ZNF300Q96RE9 604 aaPredicted RBP14.69□□□□□ -0.06
CCDC28B-204ENST00000469003 SLC35A5Q9BS91 424 aa14.69□□□□□ -0.06
CCDC28B-204ENST00000469003 CENPHQ9H3R5 247 aa14.69□□□□□ -0.06
CCDC28B-204ENST00000469003 ESRP2Q9H6T0 727 aaKnown RBP14.69□□□□□ -0.06
CCDC28B-204ENST00000469003 KCNK9Q9NPC2 374 aa14.69□□□□□ -0.06
CCDC28B-204ENST00000469003 PNPOQ9NVS9 261 aa14.69□□□□□ -0.06
CCDC28B-204ENST00000469003 MARCOQ9UEW3 520 aaPredicted RBP14.69□□□□□ -0.06
CCDC28B-204ENST00000469003 PRSS50Q9UI38 385 aa14.69□□□□□ -0.06
CCDC28B-204ENST00000469003 BTNL2Q9UIR0 455 aa14.69□□□□□ -0.06
CCDC28B-204ENST00000469003 SPIN1Q9Y657 262 aaPredicted RBP14.69□□□□□ -0.06
CCDC28B-204ENST00000469003 SULT2B1O00204 365 aa14.68□□□□□ -0.06
CCDC28B-204ENST00000469003 SMAD7O15105 426 aaKnown RBP14.68□□□□□ -0.06
CCDC28B-204ENST00000469003 BCAS1O75363 584 aaPredicted RBP14.68□□□□□ -0.06
CCDC28B-204ENST00000469003 CNOT4O95628 575 aaKnown RBP14.68□□□□□ -0.06
CCDC28B-204ENST00000469003 FESP07332 822 aa14.68□□□□□ -0.06
CCDC28B-204ENST00000469003 BST1Q10588 318 aa14.68□□□□□ -0.06
CCDC28B-204ENST00000469003 CAPRIN1Q14444 709 aaKnown RBP14.68□□□□□ -0.06
CCDC28B-204ENST00000469003 FAM174BQ3ZCQ3 159 aa14.68□□□□□ -0.06
CCDC28B-204ENST00000469003 ABLIM2Q6H8Q1 611 aa14.68□□□□□ -0.06
CCDC28B-204ENST00000469003 SEZ6L2Q6UXD5 910 aa14.68□□□□□ -0.06
CCDC28B-204ENST00000469003 LILRB1Q8NHL6 650 aaPredicted RBP14.68□□□□□ -0.06
CCDC28B-204ENST00000469003 ZNF563Q8TA94 476 aa14.68□□□□□ -0.06
CCDC28B-204ENST00000469003 CCDC106Q9BWC9 280 aa14.68□□□□□ -0.06
CCDC28B-204ENST00000469003 EXOSC3Q9NQT5 275 aaKnown RBP14.68□□□□□ -0.06
CCDC28B-204ENST00000469003 CTPS2Q9NRF8 586 aa14.68□□□□□ -0.06
CCDC28B-204ENST00000469003 ST6GALNAC1Q9NSC7 600 aaPredicted RBP14.68□□□□□ -0.06
CCDC28B-204ENST00000469003 CHRNA9Q9UGM1 479 aa14.68□□□□□ -0.06
CCDC28B-204ENST00000469003 RAB21Q9UL25 225 aa14.68□□□□□ -0.06
CCDC28B-204ENST00000469003 FN1P02751 2386 aaKnown RBP14.68□□□□□ -0.06
CCDC28B-204ENST00000469003 IGKV3D-15A0A087WSY6 115 aa14.67□□□□□ -0.06
CCDC28B-204ENST00000469003 PRAMEF27A3QJZ7 478 aa14.67□□□□□ -0.06
CCDC28B-204ENST00000469003 C9JVG2 144 aa14.67□□□□□ -0.06
CCDC28B-204ENST00000469003 HMGN4O00479 90 aa14.67□□□□□ -0.06
CCDC28B-204ENST00000469003 SDHDO14521 159 aa14.67□□□□□ -0.06
CCDC28B-204ENST00000469003 CLOCKO15516 846 aa14.67□□□□□ -0.06
CCDC28B-204ENST00000469003 ALDOCP09972 364 aaKnown RBP14.67□□□□□ -0.06
CCDC28B-204ENST00000469003 TFPIP10646 304 aa14.67□□□□□ -0.06
CCDC28B-204ENST00000469003 EDNRAP25101 427 aa14.67□□□□□ -0.06
CCDC28B-204ENST00000469003 FKBP2P26885 142 aaKnown RBP14.67□□□□□ -0.06
CCDC28B-204ENST00000469003 ATP5J2P56134 94 aa14.67□□□□□ -0.06
CCDC28B-204ENST00000469003 UFM1P61960 85 aa14.67□□□□□ -0.06
CCDC28B-204ENST00000469003 RPS4XP62701 263 aaKnown RBP14.67□□□□□ -0.06
CCDC28B-204ENST00000469003 KCNJ10P78508 379 aa14.67□□□□□ -0.06
CCDC28B-204ENST00000469003 TXNL4AP83876 142 aaKnown RBP14.67□□□□□ -0.06
CCDC28B-204ENST00000469003 HPCAP84074 193 aa14.67□□□□□ -0.06
CCDC28B-204ENST00000469003 PDK3Q15120 406 aa14.67□□□□□ -0.06
CCDC28B-204ENST00000469003 GPAT3Q53EU6 434 aa14.67□□□□□ -0.06
CCDC28B-204ENST00000469003 GRINAQ7Z429 371 aa14.67□□□□□ -0.06
CCDC28B-204ENST00000469003 GALNT5Q7Z7M9 940 aa14.67□□□□□ -0.06
CCDC28B-204ENST00000469003 CROCCP2Q86T23 111 aa14.67□□□□□ -0.06
CCDC28B-204ENST00000469003 MTDHQ86UE4 582 aaKnown RBP14.67□□□□□ -0.06
CCDC28B-204ENST00000469003 ARFGAP2Q8N6H7 521 aa14.67□□□□□ -0.06
CCDC28B-204ENST00000469003 PIWIL2Q8TC59 973 aaKnown RBP14.67□□□□□ -0.06
CCDC28B-204ENST00000469003 FBXW5Q969U6 566 aa14.67□□□□□ -0.06
CCDC28B-204ENST00000469003 ZNF775Q96BV0 537 aaPredicted RBP14.67□□□□□ -0.06
CCDC28B-204ENST00000469003 ZG16BQ96DA0 208 aa14.67□□□□□ -0.06
CCDC28B-204ENST00000469003 TEX37Q96LM6 180 aa14.67□□□□□ -0.06
CCDC28B-204ENST00000469003 AIG1Q9NVV5 245 aa14.67□□□□□ -0.06
CCDC28B-204ENST00000469003 LAMP3Q9UQV4 416 aa14.67□□□□□ -0.06
CCDC28B-204ENST00000469003 COL6A5A8TX70 2615 aa14.67□□□□□ -0.06
CCDC28B-204ENST00000469003 LYZL6O75951 148 aa14.66□□□□□ -0.06
CCDC28B-204ENST00000469003 PMS2P2O95744 297 aa14.66□□□□□ -0.06
CCDC28B-204ENST00000469003 COX5AP20674 150 aa14.66□□□□□ -0.06
CCDC28B-204ENST00000469003 RYKP34925 604 aa14.66□□□□□ -0.06
CCDC28B-204ENST00000469003 CLK1P49759 484 aaKnown RBP14.66□□□□□ -0.06
CCDC28B-204ENST00000469003 NME5P56597 212 aa14.66□□□□□ -0.06
CCDC28B-204ENST00000469003 PLAURQ03405 335 aa14.66□□□□□ -0.06
CCDC28B-204ENST00000469003 CHRNEQ04844 493 aa14.66□□□□□ -0.06
CCDC28B-204ENST00000469003 ZNF672Q499Z4 452 aaPredicted RBP14.66□□□□□ -0.06
CCDC28B-204ENST00000469003 HHATQ5VTY9 493 aa14.66□□□□□ -0.06
CCDC28B-204ENST00000469003 SSX8Q7RTT4 187 aa14.66□□□□□ -0.06
CCDC28B-204ENST00000469003 SPATA19Q7Z5L4 167 aa14.66□□□□□ -0.06
CCDC28B-204ENST00000469003 ATG4DQ86TL0 474 aaPredicted RBP14.66□□□□□ -0.06
CCDC28B-204ENST00000469003 RNF130Q86XS8 419 aa14.66□□□□□ -0.06
CCDC28B-204ENST00000469003 CMIPQ8IY22 773 aa14.66□□□□□ -0.06
CCDC28B-204ENST00000469003 ZNF100Q8IYN0 542 aa14.66□□□□□ -0.06
CCDC28B-204ENST00000469003 TRIML2Q8N7C3 387 aa14.66□□□□□ -0.06
CCDC28B-204ENST00000469003 ZHX1-C8orf76Q96EF9 292 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms