RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 PLEKHM3Q6ZWE6 761 aa17■□□□□ 0.31
COL7A1-207ENST00000467985 TUSC5Q8IXB3 177 aa17■□□□□ 0.31
COL7A1-207ENST00000467985 STEAP2Q8NFT2 490 aa17■□□□□ 0.31
COL7A1-207ENST00000467985 ZNF563Q8TA94 476 aa17■□□□□ 0.31
COL7A1-207ENST00000467985 MARK4Q96L34 752 aa17■□□□□ 0.31
COL7A1-207ENST00000467985 OR5B2Q96R09 309 aa17■□□□□ 0.31
COL7A1-207ENST00000467985 ACTR6Q9GZN1 396 aa17■□□□□ 0.31
COL7A1-207ENST00000467985 C9JVG2 144 aa16.99■□□□□ 0.31
COL7A1-207ENST00000467985 RFXANKO14593 260 aa16.99■□□□□ 0.31
COL7A1-207ENST00000467985 ENPP1P22413 925 aa16.99■□□□□ 0.31
COL7A1-207ENST00000467985 GNGT1P63211 74 aa16.99■□□□□ 0.31
COL7A1-207ENST00000467985 CSNK2A1P68400 391 aaPredicted RBP16.99■□□□□ 0.31
COL7A1-207ENST00000467985 CHRNEQ04844 493 aa16.99■□□□□ 0.31
COL7A1-207ENST00000467985 SYT14P1Q58G82 188 aa16.99■□□□□ 0.31
COL7A1-207ENST00000467985 BEX5Q5H9J7 111 aa16.99■□□□□ 0.31
COL7A1-207ENST00000467985 LRRC74BQ6ZQY2 392 aa16.99■□□□□ 0.31
COL7A1-207ENST00000467985 MSANTD1Q6ZTZ1 278 aa16.99■□□□□ 0.31
COL7A1-207ENST00000467985 PIGTQ969N2 578 aa16.99■□□□□ 0.31
COL7A1-207ENST00000467985 PIP5K1AQ99755 562 aa16.99■□□□□ 0.31
COL7A1-207ENST00000467985 USB1Q9BQ65 265 aaKnown RBP16.99■□□□□ 0.31
COL7A1-207ENST00000467985 INPP5KQ9BT40 448 aa16.99■□□□□ 0.31
COL7A1-207ENST00000467985 QRSL1Q9H0R6 528 aaKnown RBP16.99■□□□□ 0.31
COL7A1-207ENST00000467985 CCDC134Q9H6E4 229 aa16.99■□□□□ 0.31
COL7A1-207ENST00000467985 MTHFD2LQ9H903 347 aaPredicted RBP16.99■□□□□ 0.31
COL7A1-207ENST00000467985 BCO1Q9HAY6 547 aa16.99■□□□□ 0.31
COL7A1-207ENST00000467985 ZIM2Q9NZV7 527 aa16.99■□□□□ 0.31
COL7A1-207ENST00000467985 A0A1W2PNR3 127 aa16.98■□□□□ 0.31
COL7A1-207ENST00000467985 PRAMEF27A3QJZ7 478 aa16.98■□□□□ 0.31
COL7A1-207ENST00000467985 AGAP5A6NIR3 686 aa16.98■□□□□ 0.31
COL7A1-207ENST00000467985 UBDO15205 165 aa16.98■□□□□ 0.31
COL7A1-207ENST00000467985 THBDP07204 575 aa16.98■□□□□ 0.31
COL7A1-207ENST00000467985 CDKN2CP42773 168 aa16.98■□□□□ 0.31
COL7A1-207ENST00000467985 HTR3AP46098 478 aa16.98■□□□□ 0.31
COL7A1-207ENST00000467985 CLK1P49759 484 aaKnown RBP16.98■□□□□ 0.31
COL7A1-207ENST00000467985 NR1H2P55055 460 aa16.98■□□□□ 0.31
COL7A1-207ENST00000467985 ADAM8P78325 824 aa16.98■□□□□ 0.31
COL7A1-207ENST00000467985 P2RY6Q15077 328 aa16.98■□□□□ 0.31
COL7A1-207ENST00000467985 SYPL1Q16563 259 aa16.98■□□□□ 0.31
COL7A1-207ENST00000467985 ACKR1Q16570 336 aa16.98■□□□□ 0.31
COL7A1-207ENST00000467985 SLC9B1Q4ZJI4 515 aa16.98■□□□□ 0.31
COL7A1-207ENST00000467985 TFAP2EQ6VUC0 442 aa16.98■□□□□ 0.31
COL7A1-207ENST00000467985 C20orf204Q6ZNR8 217 aa16.98■□□□□ 0.31
COL7A1-207ENST00000467985 C22orf34Q6ZV56 151 aa16.98■□□□□ 0.31
COL7A1-207ENST00000467985 GRINAQ7Z429 371 aa16.98■□□□□ 0.31
COL7A1-207ENST00000467985 ZG16BQ96DA0 208 aa16.98■□□□□ 0.31
COL7A1-207ENST00000467985 CCDC106Q9BWC9 280 aa16.98■□□□□ 0.31
COL7A1-207ENST00000467985 RMND5AQ9H871 391 aa16.98■□□□□ 0.31
COL7A1-207ENST00000467985 SDR39U1Q9NRG7 319 aaPredicted RBP16.98■□□□□ 0.31
COL7A1-207ENST00000467985 CHRNA9Q9UGM1 479 aa16.98■□□□□ 0.31
COL7A1-207ENST00000467985 PRDM4Q9UKN5 801 aa16.98■□□□□ 0.31
COL7A1-207ENST00000467985 SULT2B1O00204 365 aa16.97■□□□□ 0.31
COL7A1-207ENST00000467985 CYTIPO60759 359 aa16.97■□□□□ 0.31
COL7A1-207ENST00000467985 EDF1O60869 148 aaKnown RBP16.97■□□□□ 0.31
COL7A1-207ENST00000467985 GSNP06396 782 aa16.97■□□□□ 0.31
COL7A1-207ENST00000467985 ZCCHC18P0CG32 403 aa16.97■□□□□ 0.31
COL7A1-207ENST00000467985 TROVE2P10155 538 aaKnown RBP eCLIP16.97■□□□□ 0.31
COL7A1-207ENST00000467985 NR2F1P10589 423 aa16.97■□□□□ 0.31
COL7A1-207ENST00000467985 UQCRBP14927 111 aa16.97■□□□□ 0.31
COL7A1-207ENST00000467985 FOSL1P15407 271 aa16.97■□□□□ 0.31
COL7A1-207ENST00000467985 RYKP34925 604 aa16.97■□□□□ 0.31
COL7A1-207ENST00000467985 DIO1P49895 249 aa16.97■□□□□ 0.31
COL7A1-207ENST00000467985 RASGEF1BQ0VAM2 473 aa16.97■□□□□ 0.31
COL7A1-207ENST00000467985 TMPPEQ6ZT21 453 aa16.97■□□□□ 0.31
COL7A1-207ENST00000467985 NUFIP2Q7Z417 695 aaKnown RBP16.97■□□□□ 0.31
COL7A1-207ENST00000467985 GABRG1Q8N1C3 465 aa16.97■□□□□ 0.31
COL7A1-207ENST00000467985 ANKFN1Q8N957 763 aa16.97■□□□□ 0.31
COL7A1-207ENST00000467985 ZHX1-C8orf76Q96EF9 292 aa16.97■□□□□ 0.31
COL7A1-207ENST00000467985 ITCHQ96J02 903 aa16.97■□□□□ 0.31
COL7A1-207ENST00000467985 PSD2Q9BQI7 771 aa16.97■□□□□ 0.31
COL7A1-207ENST00000467985 NSRP1Q9H0G5 558 aaKnown RBP16.97■□□□□ 0.31
COL7A1-207ENST00000467985 SLC38A1Q9H2H9 487 aa16.97■□□□□ 0.31
COL7A1-207ENST00000467985 UBTD1Q9HAC8 227 aa16.97■□□□□ 0.31
COL7A1-207ENST00000467985 FGFR1OP2Q9NVK5 253 aa16.97■□□□□ 0.31
COL7A1-207ENST00000467985 CALML5Q9NZT1 146 aa16.97■□□□□ 0.31
COL7A1-207ENST00000467985 HDGFL3Q9Y3E1 203 aa16.97■□□□□ 0.31
COL7A1-207ENST00000467985 IGHV3-15A0A0B4J1V0 119 aa16.96■□□□□ 0.31
COL7A1-207ENST00000467985 ZNF724A8MTY0 619 aa16.96■□□□□ 0.31
COL7A1-207ENST00000467985 SMAD9O15198 467 aaKnown RBP16.96■□□□□ 0.31
COL7A1-207ENST00000467985 ARHGEF9O43307 516 aa16.96■□□□□ 0.31
COL7A1-207ENST00000467985 KLF4O43474 513 aa16.96■□□□□ 0.31
COL7A1-207ENST00000467985 DNPH1O43598 174 aa16.96■□□□□ 0.31
COL7A1-207ENST00000467985 GCM2O75603 506 aaPredicted RBP16.96■□□□□ 0.31
COL7A1-207ENST00000467985 ANP32DO95626 131 aa16.96■□□□□ 0.31
COL7A1-207ENST00000467985 DBIP07108 87 aaKnown RBP16.96■□□□□ 0.31
COL7A1-207ENST00000467985 CHRM4P08173 479 aa16.96■□□□□ 0.31
COL7A1-207ENST00000467985 TFPIP10646 304 aa16.96■□□□□ 0.31
COL7A1-207ENST00000467985 IL7RP16871 459 aa16.96■□□□□ 0.31
COL7A1-207ENST00000467985 IL32P24001 234 aa16.96■□□□□ 0.31
COL7A1-207ENST00000467985 HOXC12P31275 282 aa16.96■□□□□ 0.31
COL7A1-207ENST00000467985 POLR2JP52435 117 aaKnown RBP16.96■□□□□ 0.31
COL7A1-207ENST00000467985 FOXD4Q12950 439 aaPredicted RBP16.96■□□□□ 0.31
COL7A1-207ENST00000467985 MAVSQ7Z434 540 aa16.96■□□□□ 0.31
COL7A1-207ENST00000467985 CXorf67Q86X51 503 aaPredicted RBP16.96■□□□□ 0.31
COL7A1-207ENST00000467985 MIER2Q8N344 545 aa16.96■□□□□ 0.31
COL7A1-207ENST00000467985 WDR60Q8WVS4 1066 aa16.96■□□□□ 0.31
COL7A1-207ENST00000467985 OR52B2Q96RD2 323 aa16.96■□□□□ 0.31
COL7A1-207ENST00000467985 CTPS2Q9NRF8 586 aa16.96■□□□□ 0.31
COL7A1-207ENST00000467985 THUMPD1Q9NXG2 353 aaKnown RBP16.96■□□□□ 0.31
COL7A1-207ENST00000467985 EMC3Q9P0I2 261 aa16.96■□□□□ 0.31
COL7A1-207ENST00000467985 ROS1P08922 2347 aa16.96■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms