RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 GAB3Q8WWW8 586 aa8.16□□□□□ -1.1
HPS4-209ENST00000466781 SLC45A3Q96JT2 553 aa8.16□□□□□ -1.1
HPS4-209ENST00000466781 OR6C1Q96RD1 312 aa8.16□□□□□ -1.1
HPS4-209ENST00000466781 TIMM29Q9BSF4 260 aa8.16□□□□□ -1.1
HPS4-209ENST00000466781 PCDHGA1Q9Y5H4 931 aa8.16□□□□□ -1.1
HPS4-209ENST00000466781 ENPP4Q9Y6X5 453 aa8.16□□□□□ -1.1
HPS4-209ENST00000466781 ARAP2Q8WZ64 1704 aa8.16□□□□□ -1.1
HPS4-209ENST00000466781 AQP9O43315 295 aa8.16□□□□□ -1.1
HPS4-209ENST00000466781 GJB3O75712 270 aa8.16□□□□□ -1.1
HPS4-209ENST00000466781 CLEC3BP05452 202 aa8.16□□□□□ -1.1
HPS4-209ENST00000466781 TNFRSF1BP20333 461 aa8.16□□□□□ -1.1
HPS4-209ENST00000466781 CNR2P34972 360 aa8.16□□□□□ -1.1
HPS4-209ENST00000466781 HNRNPA1L2Q32P51 320 aaKnown RBP8.16□□□□□ -1.1
HPS4-209ENST00000466781 C9orf152Q5JTZ5 239 aa8.16□□□□□ -1.1
HPS4-209ENST00000466781 PIP5KL1Q5T9C9 394 aa8.16□□□□□ -1.1
HPS4-209ENST00000466781 ZNF529Q6P280 563 aa8.16□□□□□ -1.1
HPS4-209ENST00000466781 FAM198BQ6UWH4 519 aa8.16□□□□□ -1.1
HPS4-209ENST00000466781 FAM57BQ71RH2 274 aa8.16□□□□□ -1.1
HPS4-209ENST00000466781 ADAMTS16Q8TE57 1224 aa8.16□□□□□ -1.1
HPS4-209ENST00000466781 FIZ1Q96SL8 496 aa8.16□□□□□ -1.1
HPS4-209ENST00000466781 PBX4Q9BYU1 374 aa8.16□□□□□ -1.1
HPS4-209ENST00000466781 FAM117AQ9C073 453 aa8.16□□□□□ -1.1
HPS4-209ENST00000466781 BTNL2Q9UIR0 455 aa8.16□□□□□ -1.1
HPS4-209ENST00000466781 CNOT11Q9UKZ1 510 aaKnown RBP8.16□□□□□ -1.1
HPS4-209ENST00000466781 TCHHQ07283 1943 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 GPR137BO60478 399 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 TP53P04637 393 aaPredicted RBP8.15□□□□□ -1.1
HPS4-209ENST00000466781 GAAP10253 952 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 PCGF2P35227 344 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 DCTP40126 519 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 GK3PQ14409 553 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 EXOSC7Q15024 291 aaKnown RBP8.15□□□□□ -1.1
HPS4-209ENST00000466781 P2RY14Q15391 338 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 ALKAL1Q6UXT8 129 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 SULF2Q8IWU5 870 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 C12orf45Q8N5I9 185 aaPredicted RBP8.15□□□□□ -1.1
HPS4-209ENST00000466781 BBS1Q8NFJ9 593 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 FUBP1Q96AE4 644 aaKnown RBP8.15□□□□□ -1.1
HPS4-209ENST00000466781 ADOQ96SZ5 270 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 METTL9Q9H1A3 318 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 SLC25A18Q9H1K4 315 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 LIN28AQ9H9Z2 209 aaKnown RBP8.15□□□□□ -1.1
HPS4-209ENST00000466781 MARCH5Q9NX47 278 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 SLC23A2Q9UGH3 650 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 TRAPPC2LQ9UL33 140 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 LHX6Q9UPM6 363 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 ZNF736B4DX44 427 aaPredicted RBP8.15□□□□□ -1.1
HPS4-209ENST00000466781 GABARAPH6UMI1 98 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 SEC14L2O76054 403 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 GABARAPO95166 117 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 FBXO45P0C2W1 286 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 ERVPABLB-1P60509 514 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 SIRPAP78324 504 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 MEF2DQ14814 521 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 CCNJQ5T5M9 372 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 HSD11B1LQ7Z5J1 315 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 NAGSQ8N159 534 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 ACOT4Q8N9L9 421 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 ZNF845Q96IR2 970 aaPredicted RBP8.15□□□□□ -1.1
HPS4-209ENST00000466781 SORCS2Q96PQ0 1159 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 NKX3-1Q99801 234 aaPredicted RBP8.15□□□□□ -1.1
HPS4-209ENST00000466781 NICN1Q9BSH3 213 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 VN1R3Q9BXE9 311 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 SLC19A3Q9BZV2 496 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 OPA3Q9H6K4 179 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 ZNF286AQ9HBT8 521 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 HRASLSQ9HDD0 168 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 COL5A3P25940 1745 aaPredicted RBP8.15□□□□□ -1.1
HPS4-209ENST00000466781 OR5K3A6NET4 321 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 A8MVM7 634 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 ZNF705FA8MVS1 300 aaPredicted RBP8.15□□□□□ -1.1
HPS4-209ENST00000466781 GALR3O60755 368 aaPredicted RBP8.15□□□□□ -1.1
HPS4-209ENST00000466781 ZNF705DP0CH99 300 aaPredicted RBP8.15□□□□□ -1.1
HPS4-209ENST00000466781 ZNF705BP0CI00 300 aaPredicted RBP8.15□□□□□ -1.1
HPS4-209ENST00000466781 PRPH2P23942 346 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 HOXC13P31276 330 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 GMPRP36959 345 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 MAGEA6P43360 314 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 TRA2BP62995 288 aaKnown RBP8.15□□□□□ -1.1
HPS4-209ENST00000466781 CLDN10P78369 228 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 CATR1Q13166 79 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 SCD5Q86SK9 330 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 NPWQ8N729 165 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 ARL11Q969Q4 196 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 ARRDC3Q96B67 414 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 ELSPBP1Q96BH3 223 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 UBL7Q96S82 380 aaPredicted RBP8.15□□□□□ -1.1
HPS4-209ENST00000466781 FEVQ99581 238 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 NUDT22Q9BRQ3 303 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 SIDT1Q9NXL6 827 aaKnown RBP8.15□□□□□ -1.1
HPS4-209ENST00000466781 ZNF225Q9UK10 706 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 FBXO7Q9Y3I1 522 aa8.15□□□□□ -1.1
HPS4-209ENST00000466781 C17orf112F2Z3M2 114 aa8.15□□□□□ -1.11
HPS4-209ENST00000466781 TMEM11P17152 192 aa8.15□□□□□ -1.11
HPS4-209ENST00000466781 GJA4P35212 333 aa8.15□□□□□ -1.11
HPS4-209ENST00000466781 NKX6-1P78426 367 aaPredicted RBP8.15□□□□□ -1.11
HPS4-209ENST00000466781 DCDP81605 110 aaKnown RBP8.15□□□□□ -1.11
HPS4-209ENST00000466781 SLC36A2Q495M3 483 aa8.15□□□□□ -1.11
HPS4-209ENST00000466781 PARS2Q7L3T8 475 aaKnown RBP8.15□□□□□ -1.11
HPS4-209ENST00000466781 CCDC28AQ8IWP9 274 aa8.15□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms