RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 MARCOQ9UEW3 520 aaPredicted RBP20.21■□□□□ 0.83
PTPN4-207ENST00000460162 RNF115Q9Y4L5 304 aa20.21■□□□□ 0.83
PTPN4-207ENST00000460162 ZNF724A8MTY0 619 aa20.2■□□□□ 0.82
PTPN4-207ENST00000460162 ZNF814B7Z6K7 855 aa20.2■□□□□ 0.82
PTPN4-207ENST00000460162 FESP07332 822 aa20.2■□□□□ 0.82
PTPN4-207ENST00000460162 CHI3L1P36222 383 aaPredicted RBP20.2■□□□□ 0.82
PTPN4-207ENST00000460162 DIO1P49895 249 aa20.2■□□□□ 0.82
PTPN4-207ENST00000460162 TSC22D1Q15714 1073 aa20.2■□□□□ 0.82
PTPN4-207ENST00000460162 NCMAPQ5T1S8 102 aa20.2■□□□□ 0.82
PTPN4-207ENST00000460162 ABLIM2Q6H8Q1 611 aa20.2■□□□□ 0.82
PTPN4-207ENST00000460162 CIARTQ8N365 385 aaPredicted RBP20.2■□□□□ 0.82
PTPN4-207ENST00000460162 AKAP1Q92667 903 aaKnown RBP eCLIP20.2■□□□□ 0.82
PTPN4-207ENST00000460162 CCDC115Q96NT0 180 aa20.2■□□□□ 0.82
PTPN4-207ENST00000460162 EXOSC3Q9NQT5 275 aaKnown RBP20.2■□□□□ 0.82
PTPN4-207ENST00000460162 BTNL2Q9UIR0 455 aa20.2■□□□□ 0.82
PTPN4-207ENST00000460162 RAB21Q9UL25 225 aa20.2■□□□□ 0.82
PTPN4-207ENST00000460162 CNOT4O95628 575 aaKnown RBP20.19■□□□□ 0.82
PTPN4-207ENST00000460162 S100A3P33764 101 aa20.19■□□□□ 0.82
PTPN4-207ENST00000460162 APOBEC1P41238 236 aaKnown RBP20.19■□□□□ 0.82
PTPN4-207ENST00000460162 TXNL4AP83876 142 aaKnown RBP20.19■□□□□ 0.82
PTPN4-207ENST00000460162 BST1Q10588 318 aa20.19■□□□□ 0.82
PTPN4-207ENST00000460162 MPP2Q14168 576 aa20.19■□□□□ 0.82
PTPN4-207ENST00000460162 ALKBH2Q6NS38 261 aa20.19■□□□□ 0.82
PTPN4-207ENST00000460162 TMPPEQ6ZT21 453 aa20.19■□□□□ 0.82
PTPN4-207ENST00000460162 BHLHA15Q7RTS1 189 aaPredicted RBP20.19■□□□□ 0.82
PTPN4-207ENST00000460162 SSX8Q7RTT4 187 aa20.19■□□□□ 0.82
PTPN4-207ENST00000460162 ZNF563Q8TA94 476 aa20.19■□□□□ 0.82
PTPN4-207ENST00000460162 RAB3IL1Q8TBN0 382 aa20.19■□□□□ 0.82
PTPN4-207ENST00000460162 ZNF300Q96RE9 604 aaPredicted RBP20.19■□□□□ 0.82
PTPN4-207ENST00000460162 CCDC106Q9BWC9 280 aa20.19■□□□□ 0.82
PTPN4-207ENST00000460162 KCNK9Q9NPC2 374 aa20.19■□□□□ 0.82
PTPN4-207ENST00000460162 EMC3Q9P0I2 261 aa20.19■□□□□ 0.82
PTPN4-207ENST00000460162 CHRNA9Q9UGM1 479 aa20.19■□□□□ 0.82
PTPN4-207ENST00000460162 FN1P02751 2386 aaKnown RBP20.19■□□□□ 0.82
PTPN4-207ENST00000460162 TRIM64A6NGJ6 449 aa20.18■□□□□ 0.82
PTPN4-207ENST00000460162 TRIM64BA6NI03 449 aa20.18■□□□□ 0.82
PTPN4-207ENST00000460162 SULT2B1O00204 365 aa20.18■□□□□ 0.82
PTPN4-207ENST00000460162 CD3EP07766 207 aa20.18■□□□□ 0.82
PTPN4-207ENST00000460162 ALDOCP09972 364 aaKnown RBP20.18■□□□□ 0.82
PTPN4-207ENST00000460162 COX5AP20674 150 aa20.18■□□□□ 0.82
PTPN4-207ENST00000460162 ANXA11P50995 505 aaKnown RBP20.18■□□□□ 0.82
PTPN4-207ENST00000460162 SEZ6L2Q6UXD5 910 aa20.18■□□□□ 0.82
PTPN4-207ENST00000460162 GRINAQ7Z429 371 aa20.18■□□□□ 0.82
PTPN4-207ENST00000460162 GALNT5Q7Z7M9 940 aa20.18■□□□□ 0.82
PTPN4-207ENST00000460162 TRIML2Q8N7C3 387 aa20.18■□□□□ 0.82
PTPN4-207ENST00000460162 FBXW5Q969U6 566 aa20.18■□□□□ 0.82
PTPN4-207ENST00000460162 ST6GALNAC1Q9NSC7 600 aaPredicted RBP20.18■□□□□ 0.82
PTPN4-207ENST00000460162 PNPOQ9NVS9 261 aa20.18■□□□□ 0.82
PTPN4-207ENST00000460162 AIG1Q9NVV5 245 aa20.18■□□□□ 0.82
PTPN4-207ENST00000460162 PRSS50Q9UI38 385 aa20.18■□□□□ 0.82
PTPN4-207ENST00000460162 TLN2Q9Y4G6 2542 aa20.18■□□□□ 0.82
PTPN4-207ENST00000460162 USF3Q68DE3 2245 aa20.18■□□□□ 0.82
PTPN4-207ENST00000460162 ZANQ9Y493 2812 aa20.17■□□□□ 0.82
PTPN4-207ENST00000460162 IGKV3D-15A0A087WSY6 115 aa20.17■□□□□ 0.82
PTPN4-207ENST00000460162 HMGN4O00479 90 aa20.17■□□□□ 0.82
PTPN4-207ENST00000460162 DNPH1O43598 174 aa20.17■□□□□ 0.82
PTPN4-207ENST00000460162 BCAS1O75363 584 aaPredicted RBP20.17■□□□□ 0.82
PTPN4-207ENST00000460162 LY6G6DO95868 133 aa20.17■□□□□ 0.82
PTPN4-207ENST00000460162 FKBP2P26885 142 aaKnown RBP20.17■□□□□ 0.82
PTPN4-207ENST00000460162 RPS4XP62701 263 aaKnown RBP20.17■□□□□ 0.82
PTPN4-207ENST00000460162 LRRC74AQ0VAA2 488 aa20.17■□□□□ 0.82
PTPN4-207ENST00000460162 CAPRIN1Q14444 709 aaKnown RBP20.17■□□□□ 0.82
PTPN4-207ENST00000460162 PDK3Q15120 406 aa20.17■□□□□ 0.82
PTPN4-207ENST00000460162 GPAT3Q53EU6 434 aa20.17■□□□□ 0.82
PTPN4-207ENST00000460162 ZNF75CPQ92670 426 aaPredicted RBP20.17■□□□□ 0.82
PTPN4-207ENST00000460162 ZHX1-C8orf76Q96EF9 292 aa20.17■□□□□ 0.82
PTPN4-207ENST00000460162 PANX1Q96RD7 426 aa20.17■□□□□ 0.82
PTPN4-207ENST00000460162 CTPS2Q9NRF8 586 aa20.17■□□□□ 0.82
PTPN4-207ENST00000460162 LIPT1Q9Y234 373 aa20.17■□□□□ 0.82
PTPN4-207ENST00000460162 SDHDO14521 159 aa20.16■□□□□ 0.82
PTPN4-207ENST00000460162 CLOCKO15516 846 aa20.16■□□□□ 0.82
PTPN4-207ENST00000460162 LYZL6O75951 148 aa20.16■□□□□ 0.82
PTPN4-207ENST00000460162 PMS2P2O95744 297 aa20.16■□□□□ 0.82
PTPN4-207ENST00000460162 TFPIP10646 304 aa20.16■□□□□ 0.82
PTPN4-207ENST00000460162 ATP5J2P56134 94 aa20.16■□□□□ 0.82
PTPN4-207ENST00000460162 KCNJ10P78508 379 aa20.16■□□□□ 0.82
PTPN4-207ENST00000460162 PLAURQ03405 335 aa20.16■□□□□ 0.82
PTPN4-207ENST00000460162 SPATA19Q7Z5L4 167 aa20.16■□□□□ 0.82
PTPN4-207ENST00000460162 MTDHQ86UE4 582 aaKnown RBP20.16■□□□□ 0.82
PTPN4-207ENST00000460162 RNF130Q86XS8 419 aa20.16■□□□□ 0.82
PTPN4-207ENST00000460162 CMIPQ8IY22 773 aa20.16■□□□□ 0.82
PTPN4-207ENST00000460162 ARFGAP2Q8N6H7 521 aa20.16■□□□□ 0.82
PTPN4-207ENST00000460162 PIWIL2Q8TC59 973 aaKnown RBP20.16■□□□□ 0.82
PTPN4-207ENST00000460162 TEX37Q96LM6 180 aa20.16■□□□□ 0.82
PTPN4-207ENST00000460162 TRNT1Q96Q11 434 aaKnown RBP20.16■□□□□ 0.82
PTPN4-207ENST00000460162 PAIP2Q9BPZ3 127 aaKnown RBP20.16■□□□□ 0.82
PTPN4-207ENST00000460162 LAMP3Q9UQV4 416 aa20.16■□□□□ 0.82
PTPN4-207ENST00000460162 HDGFL3Q9Y3E1 203 aa20.16■□□□□ 0.82
PTPN4-207ENST00000460162 PRAMEF27A3QJZ7 478 aa20.15■□□□□ 0.82
PTPN4-207ENST00000460162 SMAD7O15105 426 aaKnown RBP20.15■□□□□ 0.82
PTPN4-207ENST00000460162 PGRP06401 933 aa20.15■□□□□ 0.82
PTPN4-207ENST00000460162 RYKP34925 604 aa20.15■□□□□ 0.82
PTPN4-207ENST00000460162 CLK1P49759 484 aaKnown RBP20.15■□□□□ 0.82
PTPN4-207ENST00000460162 UFM1P61960 85 aa20.15■□□□□ 0.82
PTPN4-207ENST00000460162 CHRNEQ04844 493 aa20.15■□□□□ 0.82
PTPN4-207ENST00000460162 HHATQ5VTY9 493 aa20.15■□□□□ 0.82
PTPN4-207ENST00000460162 ZNF100Q8IYN0 542 aa20.15■□□□□ 0.82
PTPN4-207ENST00000460162 LILRB1Q8NHL6 650 aaPredicted RBP20.15■□□□□ 0.82
PTPN4-207ENST00000460162 PIGXQ8TBF5 258 aa20.15■□□□□ 0.82
PTPN4-207ENST00000460162 ZG16BQ96DA0 208 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms