RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 MDC1Q14676 2089 aaKnown RBP10.44□□□□□ -0.74
USP4-205ENST00000431357 TBC1D3DA0A087WVF3 549 aa10.44□□□□□ -0.74
USP4-205ENST00000431357 TBC1D3IA0A087WXS9 549 aa10.44□□□□□ -0.74
USP4-205ENST00000431357 A0A0A6YYJ9 748 aa10.44□□□□□ -0.74
USP4-205ENST00000431357 LRRC72A6NJI9 287 aa10.44□□□□□ -0.74
USP4-205ENST00000431357 TBC1D3LB9A6J9 549 aa10.44□□□□□ -0.74
USP4-205ENST00000431357 ERVH48-1M5A8F1 160 aa10.44□□□□□ -0.74
USP4-205ENST00000431357 PEX12O00623 359 aa10.44□□□□□ -0.74
USP4-205ENST00000431357 OGG1O15527 345 aa10.44□□□□□ -0.74
USP4-205ENST00000431357 P2RX6O15547 441 aa10.44□□□□□ -0.74
USP4-205ENST00000431357 BRINP1O60477 761 aa10.44□□□□□ -0.74
USP4-205ENST00000431357 RFPL3O75679 317 aa10.44□□□□□ -0.74
USP4-205ENST00000431357 ARL6IP5O75915 188 aa10.44□□□□□ -0.74
USP4-205ENST00000431357 GPR75O95800 540 aa10.44□□□□□ -0.74
USP4-205ENST00000431357 TBC1D3HP0C7X1 549 aa10.44□□□□□ -0.74
USP4-205ENST00000431357 PTNP21246 168 aa10.44□□□□□ -0.74
USP4-205ENST00000431357 EVI2BP34910 448 aa10.44□□□□□ -0.74
USP4-205ENST00000431357 TNFRSF4P43489 277 aa10.44□□□□□ -0.74
USP4-205ENST00000431357 MMP15P51511 669 aa10.44□□□□□ -0.74
USP4-205ENST00000431357 RIPPLY1Q0D2K3 151 aa10.44□□□□□ -0.74
USP4-205ENST00000431357 ZSWIM7Q19AV6 140 aa10.44□□□□□ -0.74
USP4-205ENST00000431357 MANEAQ5SRI9 462 aa10.44□□□□□ -0.74
USP4-205ENST00000431357 CD276Q5ZPR3 534 aa10.44□□□□□ -0.74
USP4-205ENST00000431357 TBC1D3CQ6IPX1 549 aa10.44□□□□□ -0.74
USP4-205ENST00000431357 FIGLAQ6QHK4 219 aa10.44□□□□□ -0.74
USP4-205ENST00000431357 IL20RBQ6UXL0 311 aa10.44□□□□□ -0.74
USP4-205ENST00000431357 CDH24Q86UP0 819 aa10.44□□□□□ -0.74
USP4-205ENST00000431357 TBC1D3Q8IZP1 549 aaPredicted RBP10.44□□□□□ -0.74
USP4-205ENST00000431357 SYS1Q8N2H4 156 aa10.44□□□□□ -0.74
USP4-205ENST00000431357 ZNF655Q8N720 491 aaPredicted RBP10.44□□□□□ -0.74
USP4-205ENST00000431357 DNAJC5GQ8N7S2 189 aa10.44□□□□□ -0.74
USP4-205ENST00000431357 BADQ92934 168 aa10.44□□□□□ -0.74
USP4-205ENST00000431357 ABHD1Q96SE0 405 aa10.44□□□□□ -0.74
USP4-205ENST00000431357 TRIM2Q9C040 744 aa10.44□□□□□ -0.74
USP4-205ENST00000431357 FBRSQ9HAH7 460 aa10.44□□□□□ -0.74
USP4-205ENST00000431357 ZNF275Q9NSD4 429 aaPredicted RBP10.44□□□□□ -0.74
USP4-205ENST00000431357 SERTAD3Q9UJW9 196 aa10.44□□□□□ -0.74
USP4-205ENST00000431357 A0A0B4J2E0 115 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 A0A1B0GX12 115 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 AGRPO00253 132 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 RFXAPO00287 272 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 GATBO75879 557 aaKnown RBP10.43□□□□□ -0.74
USP4-205ENST00000431357 MRPL3P09001 348 aaKnown RBP10.43□□□□□ -0.74
USP4-205ENST00000431357 TFPIP10646 304 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 UGT2B7P16662 529 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 BTCP35070 178 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 GBX2P52951 348 aaPredicted RBP10.43□□□□□ -0.74
USP4-205ENST00000431357 ADPRHP54922 357 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 OR10A3P58181 314 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 OR12D2P58182 307 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 ACTA2P62736 377 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 ACTG2P63267 376 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 GPLD1P80108 840 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 CRMP1Q14194 572 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 FCN2Q15485 313 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 STK11Q15831 433 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 PRICKLE4Q2TBC4 344 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 FCRL6Q6DN72 434 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 ENPP7Q6UWV6 458 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 SPRED2Q7Z698 418 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 TOMM5Q8N4H5 51 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 POMGNT2Q8NAT1 580 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 LHFPL5Q8TAF8 219 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 PHYHIPQ92561 330 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 GHSRQ92847 366 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 RERGQ96A58 199 aaPredicted RBP10.43□□□□□ -0.74
USP4-205ENST00000431357 MRPL48Q96GC5 212 aaKnown RBP10.43□□□□□ -0.74
USP4-205ENST00000431357 MYADMQ96S97 322 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 GHITMQ9H3K2 345 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 IL21RQ9HBE5 538 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 MEPEQ9NQ76 525 aaPredicted RBP10.43□□□□□ -0.74
USP4-205ENST00000431357 KLHL1Q9NR64 748 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 TEKT2Q9UIF3 430 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 ST6GALNAC2Q9UJ37 374 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 PILRAQ9UKJ1 303 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 SCAMP1O15126 338 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 CTDSPLO15194 276 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 SLC31A1O15431 190 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 AKR7A2O43488 359 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 HYAL3O43820 417 aaPredicted RBP10.43□□□□□ -0.74
USP4-205ENST00000431357 CTSVO60911 334 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 TMEM127O75204 238 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 NKX2-2O95096 273 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 PPP1R3DO95685 299 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 EML2O95834 649 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 TCRBP04435 133 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 S100A6P06703 90 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 OR2T7P0C7T2 308 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 IL9P15248 144 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 NOS3P29474 1203 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 MAT2AP31153 395 aaKnown RBP10.43□□□□□ -0.74
USP4-205ENST00000431357 PYCR1P32322 319 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 GABRA3P34903 492 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 SOX9P48436 509 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 GPM6BQ13491 265 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 NFATC4Q14934 902 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 ITPRIPL2Q3MIP1 535 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 SLC36A2Q495M3 483 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 PRRT3Q5FWE3 981 aa10.43□□□□□ -0.74
USP4-205ENST00000431357 FAM27D1Q5T7N8 215 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms