RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 IRF3Q14653 427 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 NR0B2Q15466 257 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 RNASE10Q5GAN6 216 aaKnown RBP9.14□□□□□ -0.95
USP54-205ENST00000424265 CPTPQ5TA50 214 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 TMEM215Q68D42 235 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 RASGEF1AQ8N9B8 481 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 SEMA6DQ8NFY4 1073 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 LMLNQ96KR4 655 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 TMEM74Q96NL1 305 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 WDR83Q9BRX9 315 aaKnown RBP9.14□□□□□ -0.95
USP54-205ENST00000424265 TMEM43Q9BTV4 400 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 TMEM138Q9NPI0 162 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 CHTOPQ9Y3Y2 248 aaKnown RBP9.14□□□□□ -0.95
USP54-205ENST00000424265 SMIM30A4D0T7 59 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 METTL12A8MUP2 240 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 UBE2CO00762 179 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 OR4E1P0C645 316 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 MAP3K8P41279 467 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 PRKXP51817 358 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 ST3GAL4Q11206 333 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 UGT3A2Q3SY77 523 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 KHDRBS2Q5VWX1 349 aaKnown RBP9.14□□□□□ -0.95
USP54-205ENST00000424265 ACBD4Q8NC06 268 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 SLC24A4Q8NFF2 622 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 OR4A15Q8NGL6 344 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 ASB11Q8WXH4 323 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 MOCOSQ96EN8 888 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 UBXN10Q96LJ8 280 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 NEU1Q99519 415 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 SDHCQ99643 169 aaPredicted RBP9.14□□□□□ -0.95
USP54-205ENST00000424265 MARVELD1Q9BSK0 173 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 TEX101Q9BY14 249 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 FOXQ1Q9C009 403 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 RPS10P5Q9NQ39 176 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 HRASLS2Q9NWW9 162 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 ZIM2Q9NZV7 527 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 METTL1Q9UBP6 276 aaKnown RBP9.14□□□□□ -0.95
USP54-205ENST00000424265 ZNF629Q9UEG4 869 aaPredicted RBP9.14□□□□□ -0.95
USP54-205ENST00000424265 SERTAD3Q9UJW9 196 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 NPFFR2Q9Y5X5 522 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 M0R036 132 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 IMPA2O14732 288 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 SMAD9O15198 467 aaKnown RBP9.14□□□□□ -0.95
USP54-205ENST00000424265 SLCO2B1O94956 709 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 NMBP08949 121 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 ANXA4P09525 319 aaPredicted RBP9.14□□□□□ -0.95
USP54-205ENST00000424265 CALCRP30988 508 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 MAGEA12P43365 314 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 ZXDBP98169 803 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 ZNF549Q6P9A3 640 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 SPNS3Q6ZMD2 512 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 OR7G2Q8NG99 324 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 OR4E2Q8NGC2 313 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 A0A096LPI6 279 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 CPSF4O95639 269 aaKnown RBP9.13□□□□□ -0.95
USP54-205ENST00000424265 C21orf33P30042 268 aaPredicted RBP9.13□□□□□ -0.95
USP54-205ENST00000424265 KIR3DL1P43629 444 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 ZNF648Q5T619 568 aaPredicted RBP9.13□□□□□ -0.95
USP54-205ENST00000424265 PLD6Q8N2A8 252 aaKnown RBP9.13□□□□□ -0.95
USP54-205ENST00000424265 ARMC10Q8N2F6 343 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 DEFB119Q8N690 84 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 DUSP18Q8NEJ0 188 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 ACOT12Q8WYK0 555 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 APOLD1Q96LR9 279 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 TSPAN10Q9H1Z9 355 aaPredicted RBP9.13□□□□□ -0.95
USP54-205ENST00000424265 MS4A12Q9NXJ0 267 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 KLHL28Q9NXS3 571 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 TGOLN2O43493 480 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 PRPS1L1P21108 318 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 APEX1P27695 318 aaKnown RBP9.13□□□□□ -0.95
USP54-205ENST00000424265 LTBRP36941 435 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 ZXDAP98168 799 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 P2RY14Q15391 338 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 MICBQ29980 383 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 NHLRC3Q5JS37 347 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 SSX7Q7RTT5 188 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 TMEM200AQ86VY9 491 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 EDARADDQ8WWZ3 215 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 FOXRED1Q96CU9 486 aaPredicted RBP9.13□□□□□ -0.95
USP54-205ENST00000424265 HBEGFQ99075 208 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 DDOQ99489 341 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 REG4Q9BYZ8 158 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 MYO7AQ13402 2215 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 A0A0B4J293 547 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 CPED1A4D0V7 1026 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 G3V2L1 256 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 PIP5K1BO14986 540 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 SELENOFO60613 162 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 CD160O95971 181 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 PLGP00747 810 aaPredicted RBP9.13□□□□□ -0.95
USP54-205ENST00000424265 UBBP0CG47 229 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 UBCP0CG48 685 aaKnown RBP9.13□□□□□ -0.95
USP54-205ENST00000424265 CTSCP53634 463 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 TBPL1P62380 186 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 RPS27AP62979 156 aaKnown RBP9.13□□□□□ -0.95
USP54-205ENST00000424265 UBA52P62987 128 aaKnown RBP9.13□□□□□ -0.95
USP54-205ENST00000424265 TNFRSF9Q07011 255 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 LPCAT3Q6P1A2 487 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 ULK3Q6PHR2 472 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 TMUB2Q71RG4 321 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms