RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 SFTPDP35247 375 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 RAG2P55895 527 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 GRIK5Q16478 980 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 FXNQ16595 210 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 PRSS42Q7Z5A4 293 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.13□□□□□ -0.47
COL6A3-206ENST00000409809 LAMB4A4D0S4 1761 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 THBS1P07996 1170 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 OR10A3P58181 314 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 FAM74A1Q5RGS3 127 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 FUNDC1Q8IVP5 155 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 NRMQ8IXM6 262 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 TJP1Q07157 1748 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 TPOP07202 933 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 CCKARP32238 428 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 EPHA4P54764 986 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 HBA1P69905 142 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 MS4A2Q01362 244 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 NFATC2Q13469 925 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 TPGS2Q68CL5 300 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 GDPD4Q6W3E5 623 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 WWTR1Q9GZV5 400 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 SLC2A9Q9NRM0 540 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 OR2T1O43869 369 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 KCNK5O95279 499 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 ACRV1P26436 265 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 ANKRD16Q6P6B7 361 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 C5orf46Q6UWT4 87 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 OR51I2Q9H344 312 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 GJD2Q9UKL4 321 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 UPK3BL1B0FP48 263 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 UPK3BL2E5RIL1 263 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 EOMESO95936 686 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 ANXA7P20073 488 aaKnown RBP12.12□□□□□ -0.47
COL6A3-206ENST00000409809 CASP7P55210 303 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 TEX261Q6UWH6 196 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 ADGRG3Q86Y34 549 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 ZNF610Q8N9Z0 462 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 GPR150Q8NGU9 434 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 TTC9Q92623 222 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 TSLPQ969D9 159 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 IMP4Q96G21 291 aaKnown RBP12.12□□□□□ -0.47
COL6A3-206ENST00000409809 SLC30A3Q99726 388 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 TMEM175Q9BSA9 504 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 B4GALT7Q9UBV7 327 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 POLLQ9UGP5 575 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 SLC35A3Q9Y2D2 325 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 ZNF337Q9Y3M9 751 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 U3KQ87 197 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 EDDM13A0A1B0GTR0 161 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 SLC46A3Q7Z3Q1 461 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 PIWIL3Q7Z3Z3 882 aaKnown RBP12.12□□□□□ -0.47
COL6A3-206ENST00000409809 OR52E2Q8NGJ4 325 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 GCDHQ92947 438 aaPredicted RBP12.12□□□□□ -0.47
COL6A3-206ENST00000409809 CASD1Q96PB1 797 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 LMF2Q9BU23 707 aaKnown RBP12.12□□□□□ -0.47
COL6A3-206ENST00000409809 ALOXE3Q9BYJ1 711 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 PTBP3O95758 552 aaKnown RBP12.12□□□□□ -0.47
COL6A3-206ENST00000409809 TAS2R38P59533 333 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 MEPCEQ7L2J0 689 aaKnown RBP12.12□□□□□ -0.47
COL6A3-206ENST00000409809 KCNG3Q8TAE7 436 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 ZNF566Q969W8 418 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 ECHDC3Q96DC8 303 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 SYNPO2LQ9H987 977 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 PCDHGA6Q9Y5G7 932 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 UBR2Q8IWV8 1755 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 ALPIP09923 528 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 H2AFB1P0C5Y9 115 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 TSFMP43897 325 aaKnown RBP12.12□□□□□ -0.47
COL6A3-206ENST00000409809 SLC14A1Q13336 389 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 EBPQ15125 230 aaKnown RBP12.12□□□□□ -0.47
COL6A3-206ENST00000409809 ZNF791Q3KP31 576 aaPredicted RBP12.12□□□□□ -0.47
COL6A3-206ENST00000409809 BPHLQ86WA6 291 aaPredicted RBP12.12□□□□□ -0.47
COL6A3-206ENST00000409809 OR9K2Q8NGE7 335 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 OR52N1Q8NH53 320 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 RHCGQ9UBD6 479 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 IL36AQ9UHA7 158 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 PSAT1Q9Y617 370 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 CKAP5Q14008 2032 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 FBXO24O75426 580 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 OR2T7P0C7T2 308 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 FBXW12Q6X9E4 464 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 C17orf107Q6ZR85 190 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 NAXDQ8IW45 347 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 ZBTB44Q8NCP5 570 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 OR13D1Q8NGV5 346 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 OR2T27Q8NH04 317 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 GAB2Q9UQC2 676 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 HSPB2A8KAH6 182 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 HSPB2Q16082 182 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 ARHGAP11BQ3KRB8 267 aa12.12□□□□□ -0.47
COL6A3-206ENST00000409809 DIMT1Q9UNQ2 313 aaKnown RBP12.12□□□□□ -0.47
COL6A3-206ENST00000409809 TRIP12Q14669 1992 aaPredicted RBP12.12□□□□□ -0.47
COL6A3-206ENST00000409809 N4BP2Q86UW6 1770 aaPredicted RBP12.11□□□□□ -0.47
COL6A3-206ENST00000409809 OR2A25A4D2G3 310 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 B4DXG7 233 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 STBD1O95210 358 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 GBAP04062 536 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 EFNA3P52797 238 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 SLC24A5Q71RS6 500 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms